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Mutant Information

Mutant Name	FN439-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN439-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2943533 T-G Hetero INTERGENIC
SBS Chr1 12540580 G-A Hetero INTERGENIC
SBS Chr1 13560603 C-T Hetero INTERGENIC
SBS Chr1 34603130 G-A Hetero INTERGENIC
SBS Chr1 34982737 C-T Hetero INTERGENIC
SBS Chr1 43621114 A-G Hetero INTERGENIC
SBS Chr2 19248939 C-A Hetero START_GAINED
SBS Chr2 34069754 A-T Homo INTERGENIC
SBS Chr3 2417878 A-T Hetero INTERGENIC
SBS Chr3 5197390 G-A Homo INTERGENIC
SBS Chr3 17487886 G-T Hetero UTR_5_PRIME
SBS Chr3 17487887 A-C Hetero UTR_5_PRIME
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 28343304 T-C Homo INTRON
SBS Chr4 723264 G-A Hetero INTRON
SBS Chr4 2188092 A-G Hetero INTERGENIC
SBS Chr4 28722343 G-A Hetero INTERGENIC
SBS Chr5 24061789 C-T Hetero INTERGENIC
SBS Chr6 18819580 C-T Homo SYNONYMOUS_CODING
SBS Chr6 18831209 C-T Hetero INTERGENIC
SBS Chr6 20023337 A-T Homo INTERGENIC
SBS Chr6 28576405 G-T Hetero INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 7174965 C-T Hetero INTERGENIC
SBS Chr7 7408590 C-T Hetero INTERGENIC
SBS Chr7 8784739 A-G Hetero INTERGENIC
SBS Chr7 12501272 A-G Hetero INTERGENIC
SBS Chr7 14016523 G-A Hetero INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 24826762 T-A Hetero INTERGENIC
SBS Chr10 3278934 G-A Hetero INTERGENIC
SBS Chr10 11834538 C-A Hetero INTERGENIC
SBS Chr10 23352023 G-A Hetero INTERGENIC
SBS Chr11 10602333 C-T Hetero INTERGENIC
SBS Chr11 10720533 C-T Hetero INTERGENIC
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr11 12541381 C-T Hetero INTERGENIC
SBS Chr11 15876887 T-A Hetero INTERGENIC
SBS Chr11 16915477 G-T Hetero INTERGENIC
SBS Chr11 22765836 C-T Hetero INTERGENIC
SBS Chr12 73280 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g000900
SBS Chr12 99266 T-C Hetero INTERGENIC
SBS Chr12 99270 T-A Hetero INTERGENIC
SBS Chr12 15067022 T-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 208363 208365 2
Deletion Chr10 5700001 5898000 197999 8
Deletion Chr12 11716620 11716785 165
Deletion Chr6 12732784 12732790 6
Deletion Chr3 16739732 16739904 172
Deletion Chr3 24362816 24362818 2
Deletion Chr3 24840528 24840529 1
Deletion Chr6 26033967 26033968 1
Deletion Chr1 27363152 27363154 2
Deletion Chr1 27775646 27775648 2
Deletion Chr3 34874001 34891000 16999 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 8657609 8657612 2
Insertion Chr6 16071729 16071732 2
Insertion Chr7 25703853 25703856 2
Insertion Chr9 12579202 12579205 2
Insertion Chr12 9049126 9049129 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 5670733 5699999
Inversion Chr10 5670742 5898222
Inversion Chr1 34335799 34959626

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2943533	T-G	Hetero	INTERGENIC
SBS	Chr1	12540580	G-A	Hetero	INTERGENIC
SBS	Chr1	13560603	C-T	Hetero	INTERGENIC
SBS	Chr1	34603130	G-A	Hetero	INTERGENIC
SBS	Chr1	34982737	C-T	Hetero	INTERGENIC
SBS	Chr1	43621114	A-G	Hetero	INTERGENIC
SBS	Chr2	19248939	C-A	Hetero	START_GAINED
SBS	Chr2	34069754	A-T	Homo	INTERGENIC
SBS	Chr3	2417878	A-T	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Homo	INTERGENIC
SBS	Chr3	17487886	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	17487887	A-C	Hetero	UTR_5_PRIME
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	28343304	T-C	Homo	INTRON
SBS	Chr4	723264	G-A	Hetero	INTRON
SBS	Chr4	2188092	A-G	Hetero	INTERGENIC
SBS	Chr4	28722343	G-A	Hetero	INTERGENIC
SBS	Chr5	24061789	C-T	Hetero	INTERGENIC
SBS	Chr6	18819580	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	18831209	C-T	Hetero	INTERGENIC
SBS	Chr6	20023337	A-T	Homo	INTERGENIC
SBS	Chr6	28576405	G-T	Hetero	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	7174965	C-T	Hetero	INTERGENIC
SBS	Chr7	7408590	C-T	Hetero	INTERGENIC
SBS	Chr7	8784739	A-G	Hetero	INTERGENIC
SBS	Chr7	12501272	A-G	Hetero	INTERGENIC
SBS	Chr7	14016523	G-A	Hetero	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	24826762	T-A	Hetero	INTERGENIC
SBS	Chr10	3278934	G-A	Hetero	INTERGENIC
SBS	Chr10	11834538	C-A	Hetero	INTERGENIC
SBS	Chr10	23352023	G-A	Hetero	INTERGENIC
SBS	Chr11	10602333	C-T	Hetero	INTERGENIC
SBS	Chr11	10720533	C-T	Hetero	INTERGENIC
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr11	12541381	C-T	Hetero	INTERGENIC
SBS	Chr11	15876887	T-A	Hetero	INTERGENIC
SBS	Chr11	16915477	G-T	Hetero	INTERGENIC
SBS	Chr11	22765836	C-T	Hetero	INTERGENIC
SBS	Chr12	73280	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g000900
SBS	Chr12	99266	T-C	Hetero	INTERGENIC
SBS	Chr12	99270	T-A	Hetero	INTERGENIC
SBS	Chr12	15067022	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	208363	208365	2
Deletion	Chr10	5700001	5898000	197999	8
Deletion	Chr12	11716620	11716785	165
Deletion	Chr6	12732784	12732790	6
Deletion	Chr3	16739732	16739904	172
Deletion	Chr3	24362816	24362818	2
Deletion	Chr3	24840528	24840529	1
Deletion	Chr6	26033967	26033968	1
Deletion	Chr1	27363152	27363154	2
Deletion	Chr1	27775646	27775648	2
Deletion	Chr3	34874001	34891000	16999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5670733	5699999
Inversion	Chr10	5670742	5898222
Inversion	Chr1	34335799	34959626

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes