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| Mutant Information |
|---|
| Mutant Name | FN4390-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4390-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2994455 | T-C | HET | OsKitaake01g037700 | |
| SBS | Chr1 | 9297998 | C-T | HET | ||
| SBS | Chr1 | 9780029 | G-A | HET | ||
| SBS | Chr1 | 10831882 | A-G | HET | ||
| SBS | Chr1 | 11547846 | G-A | HET | ||
| SBS | Chr1 | 18607260 | C-G | HOMO | ||
| SBS | Chr1 | 35999125 | A-T | HOMO | ||
| SBS | Chr1 | 36274909 | C-T | HOMO | ||
| SBS | Chr1 | 38120943 | T-C | HET | ||
| SBS | Chr2 | 1900965 | G-A | HOMO | ||
| SBS | Chr2 | 7033250 | G-A | HET | ||
| SBS | Chr2 | 8306031 | G-A | HET | ||
| SBS | Chr2 | 10119555 | A-G | HET | ||
| SBS | Chr2 | 10888657 | C-A | HET | ||
| SBS | Chr2 | 31482086 | T-C | HET | ||
| SBS | Chr3 | 10178560 | T-A | HOMO | ||
| SBS | Chr3 | 17306216 | G-C | HOMO | ||
| SBS | Chr4 | 945885 | G-A | HET | ||
| SBS | Chr4 | 8176982 | G-T | HET | ||
| SBS | Chr5 | 2287988 | C-T | HET | ||
| SBS | Chr5 | 6715856 | G-A | HET | ||
| SBS | Chr5 | 23763134 | A-G | HET | ||
| SBS | Chr6 | 4204590 | G-A | HET | ||
| SBS | Chr6 | 24296269 | G-A | HET | ||
| SBS | Chr7 | 14471019 | C-T | HET | ||
| SBS | Chr8 | 17431446 | G-A | HET | ||
| SBS | Chr8 | 18807436 | A-T | HOMO | ||
| SBS | Chr8 | 21560512 | C-A | HET | ||
| SBS | Chr9 | 3077184 | C-T | HET | ||
| SBS | Chr9 | 5692956 | T-C | HET | ||
| SBS | Chr9 | 7467240 | G-A | HET | ||
| SBS | Chr9 | 13195119 | C-T | HET | ||
| SBS | Chr9 | 13195120 | C-T | HET | ||
| SBS | Chr10 | 263841 | G-C | HET | ||
| SBS | Chr10 | 3295346 | A-G | HET | ||
| SBS | Chr10 | 4791345 | G-A | HET | ||
| SBS | Chr10 | 6310929 | C-T | HET | ||
| SBS | Chr10 | 6311892 | G-A | HET | ||
| SBS | Chr11 | 14917571 | A-G | HOMO | ||
| SBS | Chr11 | 27401839 | A-T | HOMO | ||
| SBS | Chr11 | 27402354 | T-A | HET | ||
| SBS | Chr11 | 28909536 | T-A | HET | ||
| SBS | Chr12 | 324523 | T-A | HET | ||
| SBS | Chr12 | 324524 | A-T | HET | ||
| SBS | Chr12 | 23255689 | A-G | HET |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 180755 | 180755 | 1 | |
| Deletion | Chr10 | 5387935 | 5387935 | 1 | |
| Deletion | Chr1 | 6601018 | 6601026 | 9 | |
| Deletion | Chr7 | 10122413 | 10122413 | 1 | |
| Deletion | Chr8 | 13182248 | 13182251 | 4 | |
| Deletion | Chr12 | 14948186 | 14948192 | 7 | |
| Deletion | Chr6 | 15263001 | 15285000 | 22000 | 2 |
| Deletion | Chr12 | 17200228 | 17200232 | 5 | |
| Deletion | Chr11 | 17984086 | 17984123 | 38 | |
| Deletion | Chr1 | 19616597 | 19616598 | 2 | |
| Deletion | Chr1 | 19666686 | 19666698 | 13 | OsKitaake01g195800 |
| Deletion | Chr10 | 22810657 | 22810749 | 93 | |
| Deletion | Chr3 | 23057549 | 23057550 | 2 | |
| Deletion | Chr11 | 27543081 | 27543081 | 1 | |
| Deletion | Chr11 | 27725998 | 27725998 | 1 |
Insertions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 42708662 | 42708664 | 1 | |
| Insertion | Chr3 | 16627120 | 16627122 | 1 | |
| Insertion | Chr4 | 1729709 | 1729711 | 1 | |
| Insertion | Chr6 | 30483511 | 30483513 | 1 | |
| Insertion | Chr7 | 24307010 | 24307012 | 1 | |
| Insertion | Chr10 | 22214193 | 22214195 | 1 | |
| Insertion | Chr11 | 16429671 | 16429689 | 17 | |
| Insertion | Chr2 | 24273976 | 24273979 | 2 | |
| Insertion | Chr4 | 20312345 | 20312349 | 3 | |
| Insertion | Chr11 | 26635848 | 26635852 | 3 | OsKitaake11g216700  |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 20498511 | 20498592 | OsKitaake05g163100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 29610373 | Chr1 | 5980608 | 2 |
| Translocation | Chr7 | 29610377 | Chr1 | 13202335 | OsKitaake07g285400 |