Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4391-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4391-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1668513 | G-A | HET | ||
| SBS | Chr1 | 14028375 | C-T | HET | ||
| SBS | Chr1 | 18415838 | T-C | HET | ||
| SBS | Chr1 | 19800594 | G-A | HOMO | ||
| SBS | Chr1 | 20661008 | A-G | HET | ||
| SBS | Chr1 | 40081533 | G-A | HOMO | ||
| SBS | Chr2 | 4472431 | G-A | HET | ||
| SBS | Chr2 | 12397981 | T-C | HET | ||
| SBS | Chr2 | 12397983 | G-A | HET | ||
| SBS | Chr2 | 28070976 | T-A | HET | OsKitaake02g283000 | |
| SBS | Chr2 | 28070977 | C-A | HET | OsKitaake02g283000 | |
| SBS | Chr3 | 1434692 | A-T | HOMO | ||
| SBS | Chr3 | 20561181 | C-T | HET | ||
| SBS | Chr3 | 22862811 | C-A | HET | ||
| SBS | Chr3 | 28844187 | G-A | HOMO | ||
| SBS | Chr4 | 4499990 | G-C | HET | ||
| SBS | Chr4 | 7808354 | G-A | HET | ||
| SBS | Chr4 | 11210288 | G-A | HET | ||
| SBS | Chr4 | 18566563 | C-T | HET | ||
| SBS | Chr4 | 25964648 | C-T | HET | ||
| SBS | Chr5 | 7944888 | G-A | HOMO | ||
| SBS | Chr5 | 9310375 | T-A | HET | ||
| SBS | Chr5 | 14074733 | G-A | HET | ||
| SBS | Chr6 | 5897417 | G-C | HET | ||
| SBS | Chr6 | 7100758 | C-T | HOMO | ||
| SBS | Chr6 | 17196493 | T-C | HOMO | OsKitaake06g160700 | |
| SBS | Chr7 | 6449748 | A-G | HET | ||
| SBS | Chr7 | 11548312 | T-A | HOMO | ||
| SBS | Chr7 | 27356904 | T-C | HET | ||
| SBS | Chr8 | 6304082 | G-T | HOMO | ||
| SBS | Chr9 | 13704974 | C-T | HET | ||
| SBS | Chr10 | 8281276 | T-C | HOMO | ||
| SBS | Chr10 | 23267782 | T-C | HET | ||
| SBS | Chr11 | 6353927 | C-A | HET | ||
| SBS | Chr11 | 7098134 | T-C | HET | ||
| SBS | Chr11 | 8982897 | A-G | HET | ||
| SBS | Chr11 | 15114931 | C-T | HET | ||
| SBS | Chr12 | 10310360 | T-A | HET |
Deletions: 28
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 127165 | 127165 | 1 | |
| Deletion | Chr5 | 452001 | 465000 | 13000 | |
| Deletion | Chr8 | 469170 | 469170 | 1 | |
| Deletion | Chr5 | 2205104 | 2205104 | 1 | |
| Deletion | Chr3 | 2794342 | 2794348 | 7 | |
| Deletion | Chr4 | 3479945 | 3479945 | 1 | |
| Deletion | Chr7 | 5118839 | 5118839 | 1 | |
| Deletion | Chr6 | 5976432 | 5976437 | 6 | |
| Deletion | Chr2 | 8658411 | 8658411 | 1 | 2 |
| Deletion | Chr5 | 10864177 | 10864181 | 5 | |
| Deletion | Chr8 | 11387126 | 11387133 | 8 | |
| Deletion | Chr5 | 12858796 | 12858797 | 2 | |
| Deletion | Chr6 | 13171108 | 13171108 | 1 | |
| Deletion | Chr9 | 14355824 | 14355824 | 1 | |
| Deletion | Chr3 | 15081042 | 15081049 | 8 | |
| Deletion | Chr2 | 16629524 | 16629524 | 1 | |
| Deletion | Chr6 | 17582448 | 17582449 | 2 | |
| Deletion | Chr11 | 19450629 | 19450635 | 7 | |
| Deletion | Chr9 | 20869586 | 20869586 | 1 | |
| Deletion | Chr3 | 21840660 | 21840660 | 1 | 2 |
| Deletion | Chr5 | 23249816 | 23249817 | 2 | |
| Deletion | Chr2 | 24190974 | 24190974 | 1 | |
| Deletion | Chr12 | 24261338 | 24261345 | 8 | OsKitaake12g195200 |
| Deletion | Chr1 | 24513567 | 24513567 | 1 | 2 |
| Deletion | Chr12 | 25407592 | 25407600 | 9 | |
| Deletion | Chr3 | 26067974 | 26067974 | 1 | 2 |
| Deletion | Chr11 | 26788788 | 26788788 | 1 | |
| Deletion | Chr1 | 32725553 | 32725554 | 2 |
Insertions: 6
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 5605836 | 5605931 | OsKitaake06g074400 |
| Inversion | Chr7 | 11867267 | 11867493 | |
| Inversion | Chr8 | 20514042 | 20514191 | |
| Inversion | Chr2 | 28886262 | 28886387 | OsKitaake02g290300 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 5080233 | Chr7 | 2057617 | |
| Translocation | Chr9 | 5080241 | Chr7 | 2070637 | |
| Translocation | Chr7 | 6440011 | Chr6 | 17047631 |