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Mutant Information |
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Mutant Name | FN4392-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4392-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 3861663 | C-T | HET | ||
SBS | Chr1 | 22873763 | A-T | HOMO | ||
SBS | Chr1 | 26240437 | T-A | HOMO | ||
SBS | Chr1 | 28069531 | C-A | HET | ||
SBS | Chr1 | 43458012 | T-C | HET | ||
SBS | Chr2 | 2086415 | G-A | HET | ||
SBS | Chr2 | 10353849 | C-G | HET | ||
SBS | Chr2 | 15318826 | C-G | HET | OsKitaake02g159700 | |
SBS | Chr2 | 15387496 | C-T | HET | ||
SBS | Chr2 | 29161583 | G-A | HET | ||
SBS | Chr3 | 17993360 | T-G | HOMO | ||
SBS | Chr3 | 21538804 | C-T | HET | ||
SBS | Chr4 | 22721672 | T-C | HET | ||
SBS | Chr4 | 30215012 | C-T | HET | ||
SBS | Chr4 | 35866701 | A-G | HET | OsKitaake04g307300 | |
SBS | Chr5 | 10068432 | C-G | HET | ||
SBS | Chr5 | 25263714 | C-T | HET | ||
SBS | Chr6 | 17320929 | C-T | HET | ||
SBS | Chr6 | 19660018 | T-C | HET | ||
SBS | Chr6 | 25121284 | C-A | HET | ||
SBS | Chr7 | 21015754 | C-T | HOMO | ||
SBS | Chr8 | 14766157 | C-A | HET | ||
SBS | Chr8 | 22115298 | G-T | HET | ||
SBS | Chr8 | 23950681 | A-C | HET | ||
SBS | Chr8 | 25630659 | C-G | HET | ||
SBS | Chr9 | 9614296 | G-A | HET | ||
SBS | Chr10 | 14457777 | A-G | HET | ||
SBS | Chr10 | 16034254 | G-A | HET | OsKitaake10g106300 | |
SBS | Chr10 | 21792199 | A-C | HET | ||
SBS | Chr11 | 8673241 | C-T | HOMO | ||
SBS | Chr11 | 23314660 | A-G | HOMO | ||
SBS | Chr12 | 4078084 | A-G | HOMO | OsKitaake12g055500 | |
SBS | Chr12 | 9905157 | G-A | HET | ||
SBS | Chr12 | 16391811 | C-G | HET |
Deletions: 25
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 1933574 | 1933574 | 1 | |
Deletion | Chr3 | 2941576 | 2941576 | 1 | |
Deletion | Chr8 | 3096200 | 3096200 | 1 | |
Deletion | Chr8 | 3359168 | 3359169 | 2 | |
Deletion | Chr5 | 4129724 | 4129727 | 4 | |
Deletion | Chr4 | 5908303 | 5908303 | 1 | |
Deletion | Chr10 | 6784119 | 6784119 | 1 | |
Deletion | Chr12 | 11714472 | 11714635 | 164 | |
Deletion | Chr12 | 13955675 | 13955682 | 8 | |
Deletion | Chr4 | 15188153 | 15188153 | 1 | |
Deletion | Chr9 | 15379064 | 15379064 | 1 | |
Deletion | Chr3 | 17052670 | 17052692 | 23 | |
Deletion | Chr2 | 17552290 | 17552291 | 2 | OsKitaake02g176100 |
Deletion | Chr3 | 18010115 | 18010128 | 14 | OsKitaake03g220200 |
Deletion | Chr6 | 19206117 | 19206117 | 1 | |
Deletion | Chr2 | 19548902 | 19548903 | 2 | |
Deletion | Chr5 | 19756251 | 19756251 | 1 | |
Deletion | Chr2 | 19808090 | 19808094 | 5 | |
Deletion | Chr1 | 25591697 | 25591698 | 2 | |
Deletion | Chr1 | 26350859 | 26350859 | 1 | |
Deletion | Chr4 | 28883265 | 28883265 | 1 | |
Deletion | Chr3 | 30094354 | 30094361 | 8 | |
Deletion | Chr4 | 30301177 | 30301177 | 1 | |
Deletion | Chr1 | 34608469 | 34608474 | 6 | |
Deletion | Chr2 | 35602331 | 35602331 | 1 |
Insertions: 16
Inversions: 9
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr6 | 9746222 | 10359826 | |
Inversion | Chr6 | 11051555 | 11051730 | |
Inversion | Chr10 | 17494338 | 17494492 | |
Inversion | Chr10 | 19557440 | 19683593 | |
Inversion | Chr10 | 19557444 | 19683593 | |
Inversion | Chr11 | 26042872 | 26043045 | |
Inversion | Chr5 | 27098216 | 27098518 | OsKitaake05g243800 |
Inversion | Chr3 | 31031082 | 31031202 | |
Inversion | Chr1 | 36836691 | 36836813 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr7 | 8136781 | Chr1 | 36367017 | |
Translocation | Chr10 | 19530683 | Chr6 | 9746216 | |
Translocation | Chr10 | 19530839 | Chr6 | 10359820 |