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Mutant Information 

Mutant NameFN4392-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4392-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr13861663C-THET
SBS  Chr122873763A-THOMO
SBS  Chr126240437T-AHOMO
SBS  Chr128069531C-AHET
SBS  Chr143458012T-CHET
SBS  Chr22086415G-AHET
SBS  Chr210353849C-GHET
SBS  Chr215318826C-GHETOsKitaake02g159700
SBS  Chr215387496C-THET
SBS  Chr229161583G-AHET
SBS  Chr317993360T-GHOMO
SBS  Chr321538804C-THET
SBS  Chr422721672T-CHET
SBS  Chr430215012C-THET
SBS  Chr435866701A-GHETOsKitaake04g307300
SBS  Chr510068432C-GHET
SBS  Chr525263714C-THET
SBS  Chr617320929C-THET
SBS  Chr619660018T-CHET
SBS  Chr625121284C-AHET
SBS  Chr721015754C-THOMO
SBS  Chr814766157C-AHET
SBS  Chr822115298G-THET
SBS  Chr823950681A-CHET
SBS  Chr825630659C-GHET
SBS  Chr99614296G-AHET
SBS  Chr1014457777A-GHET
SBS  Chr1016034254G-AHETOsKitaake10g106300
SBS  Chr1021792199A-CHET
SBS  Chr118673241C-THOMO
SBS  Chr1123314660A-GHOMO
SBS  Chr124078084A-GHOMOOsKitaake12g055500
SBS  Chr129905157G-AHET
SBS  Chr1216391811C-GHET

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr3193357419335741
Deletion  Chr3294157629415761
Deletion  Chr8309620030962001
Deletion  Chr8335916833591692
Deletion  Chr5412972441297274
Deletion  Chr4590830359083031
Deletion  Chr10678411967841191
Deletion  Chr121171447211714635164
Deletion  Chr1213955675139556828
Deletion  Chr415188153151881531
Deletion  Chr915379064153790641
Deletion  Chr3170526701705269223
Deletion  Chr217552290175522912OsKitaake02g176100
Deletion  Chr3180101151801012814OsKitaake03g220200
Deletion  Chr619206117192061171
Deletion  Chr219548902195489032
Deletion  Chr519756251197562511
Deletion  Chr219808090198080945
Deletion  Chr125591697255916982
Deletion  Chr126350859263508591
Deletion  Chr428883265288832651
Deletion  Chr330094354300943618
Deletion  Chr430301177303011771
Deletion  Chr134608469346084746
Deletion  Chr235602331356023311

Insertions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr136792049367920522
Insertion  Chr413305272133052741
Insertion  Chr419156001191560053
Insertion  Chr517645413176454151
Insertion  Chr8377167837716801
Insertion  Chr8526452252645252
Insertion  Chr11337470833747101
Insertion  Chr121051031051062
Insertion  Chr12247916692479168616
Insertion  Chr138494887384948891
Insertion  Chr4106170210617052
Insertion  Chr520481604204816061
Insertion  Chr823032008230320112
Insertion  Chr1017412445174124471
Insertion  Chr1020463812204638152
Insertion  Chr11964402696440281

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr6974622210359826
Inversion  Chr61105155511051730
Inversion  Chr101749433817494492
Inversion  Chr101955744019683593
Inversion  Chr101955744419683593
Inversion  Chr112604287226043045
Inversion  Chr52709821627098518OsKitaake05g243800
Inversion  Chr33103108231031202
Inversion  Chr13683669136836813

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr78136781Chr136367017
Translocation  Chr1019530683Chr69746216
Translocation  Chr1019530839Chr610359820