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Mutant Information

Mutant Name	FN4395-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4395-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10834380 C-T HOMO
SBS Chr1 15960496 G-A HET
SBS Chr1 22482782 A-G HET
SBS Chr1 26085386 C-T HET
SBS Chr1 27270694 G-C HOMO
SBS Chr1 34658565 A-G HET
SBS Chr2 6263008 T-C HET
SBS Chr2 10986277 G-A HET
SBS Chr2 15086191 C-T HOMO
SBS Chr2 25501342 G-A HET
SBS Chr3 23488764 C-G HET
SBS Chr3 34888311 T-C HET
SBS Chr4 14716936 C-T HET
SBS Chr4 15522856 G-A HET
SBS Chr4 19144833 A-G HET
SBS Chr5 10542623 G-C HOMO
SBS Chr6 1048664 C-G HOMO
SBS Chr6 6468446 T-C HET
SBS Chr6 12914341 C-A HOMO
SBS Chr6 18776249 C-T HOMO
SBS Chr6 19767287 A-G HOMO
SBS Chr6 21233328 T-C HOMO
SBS Chr7 6901637 G-C HOMO
SBS Chr7 9878262 G-A HET
SBS Chr8 6427292 T-C HET
SBS Chr8 10824203 A-T HET
SBS Chr8 17369120 C-T HET
SBS Chr10 12467429 C-A HET OsKitaake10g075200
SBS Chr10 17646231 T-C HET
SBS Chr11 3890283 A-T HET
SBS Chr11 20083621 C-T HET
SBS Chr11 24217865 C-A HET
SBS Chr12 15083561 G-A HOMO
SBS Chr12 15083563 T-C HOMO
SBS Chr12 20948458 C-G HOMO

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 674284 674284 1
Deletion Chr10 2386369 2386369 1
Deletion Chr8 3002734 3002734 1
Deletion Chr5 3918033 3918038 6
Deletion Chr5 3930973 3930988 16
Deletion Chr7 4085917 4085917 1
Deletion Chr11 5015006 5015007 2
Deletion Chr12 6906551 6906552 2 2
Deletion Chr7 10063845 10063846 2
Deletion Chr7 10931073 10931074 2
Deletion Chr2 11278143 11278144 2
Deletion Chr5 14317268 14317363 96
Deletion Chr3 15006232 15006248 17
Deletion Chr10 15484793 15484794 2
Deletion Chr2 15853382 15853384 3 OsKitaake02g164250
Deletion Chr7 17304224 17304224 1
Deletion Chr12 19034030 19034032 3
Deletion Chr10 21070896 21070904 9
Deletion Chr8 22539370 22539370 1
Deletion Chr6 24056130 24056134 5
Deletion Chr5 25861269 25861278 10 OsKitaake05g228300
Deletion Chr6 29540464 29540464 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10078440 10078442 1
Insertion Chr3 30542084 30542086 1
Insertion Chr9 11717538 11717540 1
Insertion Chr1 411072 411075 2
Insertion Chr3 29111808 29111811 2
Insertion Chr9 8821056 8821061 4
Insertion Chr9 20074216 20074218 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 25337626 25525203
Inversion Chr5 25337636 25525213

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10834380	C-T	HOMO
SBS	Chr1	15960496	G-A	HET
SBS	Chr1	22482782	A-G	HET
SBS	Chr1	26085386	C-T	HET
SBS	Chr1	27270694	G-C	HOMO
SBS	Chr1	34658565	A-G	HET
SBS	Chr2	6263008	T-C	HET
SBS	Chr2	10986277	G-A	HET
SBS	Chr2	15086191	C-T	HOMO
SBS	Chr2	25501342	G-A	HET
SBS	Chr3	23488764	C-G	HET
SBS	Chr3	34888311	T-C	HET
SBS	Chr4	14716936	C-T	HET
SBS	Chr4	15522856	G-A	HET
SBS	Chr4	19144833	A-G	HET
SBS	Chr5	10542623	G-C	HOMO
SBS	Chr6	1048664	C-G	HOMO
SBS	Chr6	6468446	T-C	HET
SBS	Chr6	12914341	C-A	HOMO
SBS	Chr6	18776249	C-T	HOMO
SBS	Chr6	19767287	A-G	HOMO
SBS	Chr6	21233328	T-C	HOMO
SBS	Chr7	6901637	G-C	HOMO
SBS	Chr7	9878262	G-A	HET
SBS	Chr8	6427292	T-C	HET
SBS	Chr8	10824203	A-T	HET
SBS	Chr8	17369120	C-T	HET
SBS	Chr10	12467429	C-A	HET		OsKitaake10g075200
SBS	Chr10	17646231	T-C	HET
SBS	Chr11	3890283	A-T	HET
SBS	Chr11	20083621	C-T	HET
SBS	Chr11	24217865	C-A	HET
SBS	Chr12	15083561	G-A	HOMO
SBS	Chr12	15083563	T-C	HOMO
SBS	Chr12	20948458	C-G	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	674284	674284	1
Deletion	Chr10	2386369	2386369	1
Deletion	Chr8	3002734	3002734	1
Deletion	Chr5	3918033	3918038	6
Deletion	Chr5	3930973	3930988	16
Deletion	Chr7	4085917	4085917	1
Deletion	Chr11	5015006	5015007	2
Deletion	Chr12	6906551	6906552	2	2
Deletion	Chr7	10063845	10063846	2
Deletion	Chr7	10931073	10931074	2
Deletion	Chr2	11278143	11278144	2
Deletion	Chr5	14317268	14317363	96
Deletion	Chr3	15006232	15006248	17
Deletion	Chr10	15484793	15484794	2
Deletion	Chr2	15853382	15853384	3	OsKitaake02g164250
Deletion	Chr7	17304224	17304224	1
Deletion	Chr12	19034030	19034032	3
Deletion	Chr10	21070896	21070904	9
Deletion	Chr8	22539370	22539370	1
Deletion	Chr6	24056130	24056134	5
Deletion	Chr5	25861269	25861278	10	OsKitaake05g228300
Deletion	Chr6	29540464	29540464	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25337626	25525203
Inversion	Chr5	25337636	25525213

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes