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| Mutant Information |
|---|
| Mutant Name | FN4396-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4396-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 33324875 | A-G | HET | ||
| SBS | Chr1 | 43348085 | C-T | HOMO | OsKitaake01g479600 | |
| SBS | Chr2 | 1803613 | A-T | HET | ||
| SBS | Chr2 | 16747419 | A-G | HOMO | ||
| SBS | Chr2 | 19628679 | A-T | HOMO | ||
| SBS | Chr3 | 2218322 | G-A | HET | OsKitaake03g031900 | |
| SBS | Chr3 | 5090071 | A-T | HET | ||
| SBS | Chr3 | 5090072 | A-C | HET | ||
| SBS | Chr4 | 14871764 | G-A | HET | ||
| SBS | Chr4 | 19077983 | C-T | HET | ||
| SBS | Chr4 | 29993921 | C-G | HET | ||
| SBS | Chr5 | 11271492 | A-T | HET | ||
| SBS | Chr6 | 6215201 | G-A | HET | ||
| SBS | Chr6 | 10594659 | A-T | HOMO | ||
| SBS | Chr6 | 12239418 | A-G | HOMO | ||
| SBS | Chr6 | 26346619 | T-A | HET | ||
| SBS | Chr6 | 29900873 | G-T | HET | ||
| SBS | Chr7 | 4595598 | C-A | HET | ||
| SBS | Chr8 | 8776345 | C-T | HOMO | ||
| SBS | Chr8 | 21715332 | G-A | HOMO | ||
| SBS | Chr9 | 2859317 | G-A | HET | ||
| SBS | Chr9 | 9382690 | C-T | HET | ||
| SBS | Chr9 | 9440176 | A-G | HET | ||
| SBS | Chr9 | 17629131 | C-T | HET | ||
| SBS | Chr9 | 21332202 | G-A | HET | ||
| SBS | Chr10 | 12384083 | A-T | HET | OsKitaake10g074400 | |
| SBS | Chr10 | 15003977 | G-A | HET | ||
| SBS | Chr10 | 19913301 | T-A | HET | ||
| SBS | Chr11 | 13271716 | T-C | HOMO | ||
| SBS | Chr12 | 1653823 | C-T | HET | ||
| SBS | Chr12 | 8401603 | A-G | HET | ||
| SBS | Chr12 | 12730589 | G-A | HET | ||
| SBS | Chr12 | 18247511 | C-T | HOMO | ||
| SBS | Chr12 | 18247513 | A-T | HOMO | ||
| SBS | Chr12 | 24190776 | C-T | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1081001 | 1107000 | 26000 | OsKitaake03g016901 |
| Deletion | Chr5 | 4587001 | 4874000 | 287000 | 19 |
| Deletion | Chr1 | 4891263 | 4891263 | 1 | |
| Deletion | Chr11 | 5113489 | 5113494 | 6 | |
| Deletion | Chr5 | 7144145 | 7144145 | 1 | |
| Deletion | Chr7 | 11922796 | 11922806 | 11 | |
| Deletion | Chr6 | 13300001 | 13319000 | 19000 | 3 |
| Deletion | Chr12 | 16549818 | 16549826 | 9 | |
| Deletion | Chr12 | 18224882 | 18224899 | 18 | |
| Deletion | Chr2 | 22013446 | 22013451 | 6 | |
| Deletion | Chr5 | 22261677 | 22261678 | 2 | |
| Deletion | Chr3 | 22268486 | 22268487 | 2 | |
| Deletion | Chr1 | 23562258 | 23562260 | 3 | |
| Deletion | Chr8 | 27762165 | 27762170 | 6 | |
| Deletion | Chr4 | 27848830 | 27848830 | 1 | |
| Deletion | Chr2 | 29947658 | 29947662 | 5 | |
| Deletion | Chr1 | 41457532 | 41457532 | 1 |
Insertions: 9
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 14373192 | 14373339 | |
| Inversion | Chr4 | 17260855 | 17260999 | OsKitaake04g084600 |
| Inversion | Chr12 | 18182297 | 18226830 | |
| Inversion | Chr12 | 18182466 | 18226833 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 8715945 | Chr1 | 32896196 | 2 |
| Translocation | Chr9 | 21118110 | Chr7 | 15888157 | OsKitaake09g182100 |
| Translocation | Chr9 | 21394494 | Chr7 | 15888157 | OsKitaake09g185600 |