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Mutant Information

Mutant Name	FN4397-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4397-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7750282 G-A HET
SBS Chr1 8887153 A-G HOMO
SBS Chr1 10082009 G-T HET
SBS Chr1 14553631 G-T HET
SBS Chr1 37745773 G-A HET
SBS Chr1 43088217 G-A HOMO
SBS Chr2 10987275 G-C HOMO
SBS Chr2 35967490 G-A HOMO
SBS Chr2 36886742 A-G HET
SBS Chr3 28876378 A-T HET
SBS Chr3 29382983 T-A HET
SBS Chr3 32260694 G-T HOMO
SBS Chr3 32349057 G-A HOMO
SBS Chr4 33683736 A-G HET
SBS Chr6 14346741 A-G HOMO
SBS Chr6 20970140 T-A HOMO
SBS Chr6 28262173 G-A HOMO
SBS Chr7 4458942 T-C HET
SBS Chr7 7756952 C-T HET
SBS Chr7 9071282 G-T HET
SBS Chr7 20912535 C-A HET
SBS Chr7 21920210 G-T HET
SBS Chr8 14167007 G-T HET
SBS Chr8 22794014 A-G HOMO
SBS Chr9 7311070 T-C HOMO
SBS Chr10 19633276 C-T HET
SBS Chr11 8546165 G-A HET
SBS Chr11 11602573 G-A HET
SBS Chr11 15422951 G-A HET OsKitaake11g124400
SBS Chr11 24093361 C-A HET
SBS Chr11 24093362 T-A HET
SBS Chr12 15238112 T-C HOMO

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 439659 439667 9
Deletion Chr3 6177960 6177964 5
Deletion Chr4 6378295 6378295 1
Deletion Chr9 6537831 6537838 8
Deletion Chr4 7040885 7040885 1
Deletion Chr6 7370299 7370303 5
Deletion Chr9 7954690 7954696 7
Deletion Chr7 8107400 8107400 1 OsKitaake07g089100
Deletion Chr11 9060001 9096000 36000 2
Deletion Chr4 10473598 10473599 2
Deletion Chr9 11636861 11636874 14
Deletion Chr4 12207896 12207898 3
Deletion Chr12 14372055 14372055 1
Deletion Chr5 14667842 14667845 4
Deletion Chr6 16926242 16926246 5
Deletion Chr6 23030424 23030431 8
Deletion Chr4 23482604 23482612 9
Deletion Chr1 24657603 24657607 5
Deletion Chr6 25969647 25969647 1
Deletion Chr11 26375879 26375880 2
Deletion Chr11 27754589 27754590 2
Deletion Chr4 31902450 31902466 17
Deletion Chr3 35536862 35536863 2

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17438740 17438744 3
Insertion Chr4 26554230 26554234 3
Insertion Chr6 25509373 25509375 1
Insertion Chr7 8764158 8764161 2
Insertion Chr12 8936016 8936019 2
Insertion Chr4 35197328 35197331 2
Insertion Chr11 8841272 8841284 11
Insertion Chr12 1044950 1044953 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2944965 2945065
Inversion Chr11 7529960 8403884
Inversion Chr1 14875346 15793069 OsKitaake01g141700
Inversion Chr1 14875821 15793076 OsKitaake01g141700
Inversion Chr11 15153842 15154028

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 4314890 Chr6 5131945 OsKitaake07g054200
Translocation Chr7 4314895 Chr6 5122304 OsKitaake07g054200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7750282	G-A	HET
SBS	Chr1	8887153	A-G	HOMO
SBS	Chr1	10082009	G-T	HET
SBS	Chr1	14553631	G-T	HET
SBS	Chr1	37745773	G-A	HET
SBS	Chr1	43088217	G-A	HOMO
SBS	Chr2	10987275	G-C	HOMO
SBS	Chr2	35967490	G-A	HOMO
SBS	Chr2	36886742	A-G	HET
SBS	Chr3	28876378	A-T	HET
SBS	Chr3	29382983	T-A	HET
SBS	Chr3	32260694	G-T	HOMO
SBS	Chr3	32349057	G-A	HOMO
SBS	Chr4	33683736	A-G	HET
SBS	Chr6	14346741	A-G	HOMO
SBS	Chr6	20970140	T-A	HOMO
SBS	Chr6	28262173	G-A	HOMO
SBS	Chr7	4458942	T-C	HET
SBS	Chr7	7756952	C-T	HET
SBS	Chr7	9071282	G-T	HET
SBS	Chr7	20912535	C-A	HET
SBS	Chr7	21920210	G-T	HET
SBS	Chr8	14167007	G-T	HET
SBS	Chr8	22794014	A-G	HOMO
SBS	Chr9	7311070	T-C	HOMO
SBS	Chr10	19633276	C-T	HET
SBS	Chr11	8546165	G-A	HET
SBS	Chr11	11602573	G-A	HET
SBS	Chr11	15422951	G-A	HET		OsKitaake11g124400
SBS	Chr11	24093361	C-A	HET
SBS	Chr11	24093362	T-A	HET
SBS	Chr12	15238112	T-C	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	439659	439667	9
Deletion	Chr3	6177960	6177964	5
Deletion	Chr4	6378295	6378295	1
Deletion	Chr9	6537831	6537838	8
Deletion	Chr4	7040885	7040885	1
Deletion	Chr6	7370299	7370303	5
Deletion	Chr9	7954690	7954696	7
Deletion	Chr7	8107400	8107400	1	OsKitaake07g089100
Deletion	Chr11	9060001	9096000	36000	2
Deletion	Chr4	10473598	10473599	2
Deletion	Chr9	11636861	11636874	14
Deletion	Chr4	12207896	12207898	3
Deletion	Chr12	14372055	14372055	1
Deletion	Chr5	14667842	14667845	4
Deletion	Chr6	16926242	16926246	5
Deletion	Chr6	23030424	23030431	8
Deletion	Chr4	23482604	23482612	9
Deletion	Chr1	24657603	24657607	5
Deletion	Chr6	25969647	25969647	1
Deletion	Chr11	26375879	26375880	2
Deletion	Chr11	27754589	27754590	2
Deletion	Chr4	31902450	31902466	17
Deletion	Chr3	35536862	35536863	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2944965	2945065
Inversion	Chr11	7529960	8403884
Inversion	Chr1	14875346	15793069	OsKitaake01g141700
Inversion	Chr1	14875821	15793076	OsKitaake01g141700
Inversion	Chr11	15153842	15154028

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes