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Mutant Information

Mutant Name	FN4398-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4398-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40958513 G-T HOMO
SBS Chr2 37134224 A-G HET
SBS Chr3 34543495 C-G HET
SBS Chr3 36596360 T-G HET
SBS Chr4 72275 G-A HET
SBS Chr4 4051649 G-C HET
SBS Chr4 9031613 T-G HET OsKitaake04g046600
SBS Chr4 20922331 C-A HET OsKitaake04g114300
SBS Chr5 23398298 T-A HET
SBS Chr6 7523783 T-A HET
SBS Chr6 16041511 T-A HET OsKitaake06g154300
SBS Chr6 16244865 G-A HET
SBS Chr6 19670609 C-A HET
SBS Chr7 1474693 G-C HET
SBS Chr7 21127638 C-G HET OsKitaake07g174800
SBS Chr7 26758137 A-G HET
SBS Chr8 11887645 T-C HET
SBS Chr8 16944839 T-G HET
SBS Chr8 18360222 A-T HET
SBS Chr9 12730957 G-A HOMO
SBS Chr10 2468948 T-C HET
SBS Chr10 20410189 C-T HET
SBS Chr11 20337230 T-A HOMO
SBS Chr12 17433326 C-T HET

Deletions: 40

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 50460 50463 4 OsKitaake08g000500
Deletion Chr5 4824581 4824593 13
Deletion Chr1 5096012 5096014 3
Deletion Chr3 5385088 5385088 1
Deletion Chr4 6071133 6071133 1
Deletion Chr12 6309001 6342000 33000 4
Deletion Chr7 6899249 6899258 10
Deletion Chr9 7235221 7235221 1
Deletion Chr5 7556468 7556468 1
Deletion Chr12 8664302 8664315 14
Deletion Chr10 9862015 9862015 1
Deletion Chr5 10233481 10233481 1
Deletion Chr10 11211590 11211609 20
Deletion Chr2 12338267 12338283 17
Deletion Chr5 12680466 12680484 19
Deletion Chr3 14175370 14175370 1
Deletion Chr11 14588001 14729000 141000 7
Deletion Chr5 14662001 14705000 43000 2
Deletion Chr5 14706001 14723000 17000 OsKitaake05g112200
Deletion Chr11 14743001 15029000 286000 12
Deletion Chr4 15690028 15690104 77
Deletion Chr1 16056370 16056373 4
Deletion Chr8 18413744 18413748 5
Deletion Chr1 18692633 18692633 1
Deletion Chr7 20330142 20330147 6
Deletion Chr9 21200913 21200913 1
Deletion Chr5 21845959 21845959 1
Deletion Chr8 22069001 22098000 29000 4
Deletion Chr11 22490001 22498000 8000
Deletion Chr2 22563058 22563059 2
Deletion Chr5 25998177 25998178 2
Deletion Chr11 26344960 26344960 1
Deletion Chr5 27652332 27652332 1
Deletion Chr6 30623479 30623479 1
Deletion Chr4 34832001 35003000 171000 19
Deletion Chr4 35010001 35033000 23000 5
Deletion Chr2 35217273 35217292 20
Deletion Chr2 35929567 35929583 17
Deletion Chr1 39629707 39629718 12
Deletion Chr1 41951950 41951950 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28877799 28877801 1
Insertion Chr6 21030801 21030804 2
Insertion Chr8 26759014 26759016 1
Insertion Chr5 21567610 21567612 1
Insertion Chr7 8358456 8358458 1
Insertion Chr10 1282747 1282749 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 9328066 9340266
Inversion Chr11 9328071 9340268
Inversion Chr7 11049006 11049152
Inversion Chr1 41230628 41230717

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14585876 Chr9 18793877
Translocation Chr11 14617267 Chr8 22097496

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40958513	G-T	HOMO
SBS	Chr2	37134224	A-G	HET
SBS	Chr3	34543495	C-G	HET
SBS	Chr3	36596360	T-G	HET
SBS	Chr4	72275	G-A	HET
SBS	Chr4	4051649	G-C	HET
SBS	Chr4	9031613	T-G	HET		OsKitaake04g046600
SBS	Chr4	20922331	C-A	HET		OsKitaake04g114300
SBS	Chr5	23398298	T-A	HET
SBS	Chr6	7523783	T-A	HET
SBS	Chr6	16041511	T-A	HET		OsKitaake06g154300
SBS	Chr6	16244865	G-A	HET
SBS	Chr6	19670609	C-A	HET
SBS	Chr7	1474693	G-C	HET
SBS	Chr7	21127638	C-G	HET		OsKitaake07g174800
SBS	Chr7	26758137	A-G	HET
SBS	Chr8	11887645	T-C	HET
SBS	Chr8	16944839	T-G	HET
SBS	Chr8	18360222	A-T	HET
SBS	Chr9	12730957	G-A	HOMO
SBS	Chr10	2468948	T-C	HET
SBS	Chr10	20410189	C-T	HET
SBS	Chr11	20337230	T-A	HOMO
SBS	Chr12	17433326	C-T	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	50460	50463	4	OsKitaake08g000500
Deletion	Chr5	4824581	4824593	13
Deletion	Chr1	5096012	5096014	3
Deletion	Chr3	5385088	5385088	1
Deletion	Chr4	6071133	6071133	1
Deletion	Chr12	6309001	6342000	33000	4
Deletion	Chr7	6899249	6899258	10
Deletion	Chr9	7235221	7235221	1
Deletion	Chr5	7556468	7556468	1
Deletion	Chr12	8664302	8664315	14
Deletion	Chr10	9862015	9862015	1
Deletion	Chr5	10233481	10233481	1
Deletion	Chr10	11211590	11211609	20
Deletion	Chr2	12338267	12338283	17
Deletion	Chr5	12680466	12680484	19
Deletion	Chr3	14175370	14175370	1
Deletion	Chr11	14588001	14729000	141000	7
Deletion	Chr5	14662001	14705000	43000	2
Deletion	Chr5	14706001	14723000	17000	OsKitaake05g112200
Deletion	Chr11	14743001	15029000	286000	12
Deletion	Chr4	15690028	15690104	77
Deletion	Chr1	16056370	16056373	4
Deletion	Chr8	18413744	18413748	5
Deletion	Chr1	18692633	18692633	1
Deletion	Chr7	20330142	20330147	6
Deletion	Chr9	21200913	21200913	1
Deletion	Chr5	21845959	21845959	1
Deletion	Chr8	22069001	22098000	29000	4
Deletion	Chr11	22490001	22498000	8000
Deletion	Chr2	22563058	22563059	2
Deletion	Chr5	25998177	25998178	2
Deletion	Chr11	26344960	26344960	1
Deletion	Chr5	27652332	27652332	1
Deletion	Chr6	30623479	30623479	1
Deletion	Chr4	34832001	35003000	171000	19
Deletion	Chr4	35010001	35033000	23000	5
Deletion	Chr2	35217273	35217292	20
Deletion	Chr2	35929567	35929583	17
Deletion	Chr1	39629707	39629718	12
Deletion	Chr1	41951950	41951950	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9328066	9340266
Inversion	Chr11	9328071	9340268
Inversion	Chr7	11049006	11049152
Inversion	Chr1	41230628	41230717

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes