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Mutant Information

Mutant Name	FN440-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN440-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7514286 T-C Hetero INTERGENIC
SBS Chr2 2519302 T-A Homo INTERGENIC
SBS Chr2 4420230 G-T Hetero INTERGENIC
SBS Chr3 35642149 C-T Hetero INTERGENIC
SBS Chr3 35642152 T-A Hetero INTERGENIC
SBS Chr4 8452499 C-T Homo INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr4 20330068 T-C Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 10090732 C-T Hetero INTERGENIC
SBS Chr5 15265202 G-T Hetero INTERGENIC
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr7 11830976 C-T Hetero INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr8 14703673 C-T Homo INTERGENIC
SBS Chr8 23466000 C-T Homo INTERGENIC
SBS Chr9 2846400 A-G Homo INTERGENIC
SBS Chr9 16607440 A-T Hetero INTERGENIC
SBS Chr10 6955220 G-C Homo INTRON
SBS Chr10 12477868 T-A Hetero INTRON
SBS Chr10 13258365 C-T Hetero INTERGENIC
SBS Chr11 2643650 C-G Hetero INTERGENIC
SBS Chr12 13008522 C-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1485718 1486109 391
Deletion Chr10 8096190 8096273 83
Deletion Chr5 9253001 9422000 168999 7
Deletion Chr7 10250040 10250047 7 OsKitaake07g100600
Deletion Chr6 12274376 12274393 17
Deletion Chr10 14287123 14287133 10
Deletion Chr7 19386368 19386375 7 OsKitaake07g157200
Deletion Chr3 25967012 25967014 2
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44249840 44249843 2
Insertion Chr7 3416576 3416579 2
Insertion Chr8 1997954 1997957 2
Insertion Chr2 28849671 28849673 1
Insertion Chr6 7838 7840 1
Insertion Chr10 21368120 21368123 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 9252320 9502813 OsKitaake05g087300
Inversion Chr5 9423698 9502835 OsKitaake05g087300
Inversion Chr11 19461499 19491832
Inversion Chr11 19461510 19491835

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7514286	T-C	Hetero	INTERGENIC
SBS	Chr2	2519302	T-A	Homo	INTERGENIC
SBS	Chr2	4420230	G-T	Hetero	INTERGENIC
SBS	Chr3	35642149	C-T	Hetero	INTERGENIC
SBS	Chr3	35642152	T-A	Hetero	INTERGENIC
SBS	Chr4	8452499	C-T	Homo	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr4	20330068	T-C	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	10090732	C-T	Hetero	INTERGENIC
SBS	Chr5	15265202	G-T	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr7	11830976	C-T	Hetero	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr8	14703673	C-T	Homo	INTERGENIC
SBS	Chr8	23466000	C-T	Homo	INTERGENIC
SBS	Chr9	2846400	A-G	Homo	INTERGENIC
SBS	Chr9	16607440	A-T	Hetero	INTERGENIC
SBS	Chr10	6955220	G-C	Homo	INTRON
SBS	Chr10	12477868	T-A	Hetero	INTRON
SBS	Chr10	13258365	C-T	Hetero	INTERGENIC
SBS	Chr11	2643650	C-G	Hetero	INTERGENIC
SBS	Chr12	13008522	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1485718	1486109	391
Deletion	Chr10	8096190	8096273	83
Deletion	Chr5	9253001	9422000	168999	7
Deletion	Chr7	10250040	10250047	7	OsKitaake07g100600
Deletion	Chr6	12274376	12274393	17
Deletion	Chr10	14287123	14287133	10
Deletion	Chr7	19386368	19386375	7	OsKitaake07g157200
Deletion	Chr3	25967012	25967014	2
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9252320	9502813	OsKitaake05g087300
Inversion	Chr5	9423698	9502835	OsKitaake05g087300
Inversion	Chr11	19461499	19491832
Inversion	Chr11	19461510	19491835

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes