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| Mutant Information |
|---|
| Mutant Name | FN4400-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4400-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21824755 | G-C | HET | ||
| SBS | Chr1 | 24141482 | C-T | HET | ||
| SBS | Chr1 | 39826322 | C-T | HOMO | ||
| SBS | Chr2 | 20011659 | C-T | HET | ||
| SBS | Chr2 | 31550774 | A-T | HOMO | ||
| SBS | Chr3 | 3097587 | T-A | HET | ||
| SBS | Chr3 | 9889067 | T-C | HET | OsKitaake03g135300 | |
| SBS | Chr3 | 16375372 | G-A | HET | ||
| SBS | Chr3 | 20620169 | G-A | HOMO | ||
| SBS | Chr4 | 2967870 | C-G | HET | ||
| SBS | Chr4 | 3626868 | T-A | HET | ||
| SBS | Chr4 | 5581890 | C-G | HET | ||
| SBS | Chr4 | 11497983 | C-T | HET | ||
| SBS | Chr4 | 13588818 | A-G | HET | ||
| SBS | Chr5 | 2032861 | C-A | HET | ||
| SBS | Chr6 | 23316470 | G-A | HOMO | ||
| SBS | Chr6 | 23316471 | T-A | HOMO | ||
| SBS | Chr6 | 27852356 | C-G | HET | ||
| SBS | Chr7 | 24464082 | C-A | HOMO | ||
| SBS | Chr8 | 11913329 | T-A | HOMO | ||
| SBS | Chr8 | 21860300 | G-T | HET | ||
| SBS | Chr9 | 12515064 | C-T | HOMO | ||
| SBS | Chr9 | 16023275 | G-A | HET | ||
| SBS | Chr10 | 99263 | C-T | HET | ||
| SBS | Chr10 | 4776213 | G-T | HET | ||
| SBS | Chr10 | 10579534 | C-A | HET | ||
| SBS | Chr10 | 10579537 | A-T | HET | ||
| SBS | Chr10 | 10579540 | A-T | HET | ||
| SBS | Chr11 | 16164456 | G-A | HET | ||
| SBS | Chr11 | 16164457 | G-A | HET | ||
| SBS | Chr12 | 9228506 | G-A | HOMO | ||
| SBS | Chr12 | 9228507 | A-T | HOMO | ||
| SBS | Chr12 | 14385003 | A-T | HET |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2081815 | 2081816 | 2 | |
| Deletion | Chr9 | 3687190 | 3687202 | 13 | |
| Deletion | Chr3 | 8072885 | 8072891 | 7 | |
| Deletion | Chr9 | 8779925 | 8780015 | 91 | |
| Deletion | Chr9 | 14424087 | 14424087 | 1 | |
| Deletion | Chr3 | 14889392 | 14889392 | 1 | |
| Deletion | Chr5 | 16250330 | 16250335 | 6 | |
| Deletion | Chr11 | 16948889 | 16948892 | 4 | |
| Deletion | Chr6 | 19846887 | 19846887 | 1 | |
| Deletion | Chr12 | 20733780 | 20733781 | 2 | |
| Deletion | Chr4 | 27286539 | 27286539 | 1 | OsKitaake04g198600 |
| Deletion | Chr11 | 27667120 | 27667120 | 1 | 2 |
| Deletion | Chr2 | 29617067 | 29617069 | 3 | |
| Deletion | Chr2 | 36708069 | 36708073 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 650878 | 650882 | 3 | |
| Insertion | Chr9 | 13551598 | 13551600 | 1 | |
| Insertion | Chr11 | 19865797 | 19865801 | 3 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 1339206 | 2094359 | OsKitaake10g016300 |
| Inversion | Chr10 | 1339219 | 2094367 | OsKitaake10g016300 |
| Inversion | Chr9 | 11078981 | 11079140 | |
| Inversion | Chr3 | 15803661 | 15803805 | |
| Inversion | Chr5 | 22849556 | 22849676 | |
| Inversion | Chr5 | 24121685 | 24121957 |