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Mutant Information |
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Mutant Name | FN4404-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4404-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 62
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 2364998 | G-A | HET | ||
SBS | Chr1 | 10199046 | G-A | HET | ||
SBS | Chr1 | 10515977 | C-G | HET | ||
SBS | Chr1 | 14364605 | G-A | HET | ||
SBS | Chr1 | 14860304 | C-T | HET | OsKitaake01g141550 | |
SBS | Chr1 | 27011195 | G-T | HET | ||
SBS | Chr1 | 41111064 | C-G | HET | ||
SBS | Chr1 | 43483672 | C-T | HET | ||
SBS | Chr1 | 44283866 | G-A | HET | ||
SBS | Chr2 | 5192232 | T-C | HET | ||
SBS | Chr2 | 18532108 | G-T | HET | ||
SBS | Chr2 | 21534620 | A-G | HET | OsKitaake02g208200 | |
SBS | Chr2 | 25517503 | T-A | HET | ||
SBS | Chr2 | 35230534 | A-G | HET | ||
SBS | Chr3 | 4786312 | G-A | HET | ||
SBS | Chr3 | 6036146 | T-C | HET | ||
SBS | Chr3 | 19216247 | G-A | HET | ||
SBS | Chr3 | 19806529 | G-T | HET | ||
SBS | Chr4 | 9010001 | C-T | HOMO | ||
SBS | Chr4 | 14537100 | G-A | HET | ||
SBS | Chr4 | 16372089 | C-T | HET | ||
SBS | Chr4 | 18366687 | A-T | HET | ||
SBS | Chr4 | 31472287 | G-T | HET | ||
SBS | Chr4 | 32149994 | G-A | HOMO | ||
SBS | Chr4 | 35305523 | T-G | HET | ||
SBS | Chr5 | 409226 | G-A | HET | ||
SBS | Chr5 | 1042896 | C-T | HET | ||
SBS | Chr5 | 10331095 | G-C | HET | ||
SBS | Chr5 | 10986326 | T-C | HET | ||
SBS | Chr5 | 10988527 | G-A | HET | ||
SBS | Chr5 | 14300347 | G-T | HET | ||
SBS | Chr5 | 17948684 | A-G | HET | ||
SBS | Chr5 | 20919496 | A-C | HET | ||
SBS | Chr5 | 21549876 | C-T | HET | ||
SBS | Chr6 | 5344047 | A-T | HET | ||
SBS | Chr6 | 9877328 | A-G | HET | ||
SBS | Chr6 | 18586552 | G-A | HOMO | ||
SBS | Chr6 | 24551053 | A-T | HET | ||
SBS | Chr7 | 4794643 | A-T | HET | ||
SBS | Chr7 | 11718155 | A-C | HET | ||
SBS | Chr7 | 17300817 | T-C | HET | ||
SBS | Chr7 | 17715434 | G-A | HET | ||
SBS | Chr7 | 25607100 | C-T | HET | ||
SBS | Chr7 | 26422482 | G-A | HET | ||
SBS | Chr8 | 12898529 | C-T | HET | ||
SBS | Chr8 | 17554560 | G-C | HET | OsKitaake08g131700 | |
SBS | Chr8 | 20784539 | G-T | HET | ||
SBS | Chr9 | 7335938 | C-T | HET | ||
SBS | Chr9 | 17837416 | C-A | HET | ||
SBS | Chr10 | 12519840 | T-A | HET | ||
SBS | Chr10 | 23239148 | C-T | HET | ||
SBS | Chr11 | 1567611 | C-A | HET | ||
SBS | Chr11 | 8364997 | G-A | HOMO | ||
SBS | Chr11 | 8906938 | T-C | HET | ||
SBS | Chr11 | 14187199 | T-G | HET | ||
SBS | Chr11 | 21512477 | C-T | HET | ||
SBS | Chr11 | 24775784 | T-C | HET | ||
SBS | Chr12 | 3162362 | G-T | HET | ||
SBS | Chr12 | 6499857 | A-G | HET | ||
SBS | Chr12 | 8293173 | C-T | HET | ||
SBS | Chr12 | 11655849 | C-T | HET | ||
SBS | Chr12 | 13267462 | A-T | HOMO |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr5 | 606533 | 606536 | 4 | OsKitaake05g006400 |
Deletion | Chr5 | 1487987 | 1487991 | 5 | |
Deletion | Chr3 | 2312489 | 2312489 | 1 | |
Deletion | Chr9 | 3307380 | 3307388 | 9 | |
Deletion | Chr8 | 3327736 | 3327736 | 1 | |
Deletion | Chr7 | 4635113 | 4635113 | 1 | |
Deletion | Chr2 | 5601517 | 5601518 | 2 | |
Deletion | Chr5 | 6572390 | 6572390 | 1 | |
Deletion | Chr11 | 6933282 | 6933302 | 21 | |
Deletion | Chr9 | 9454549 | 9454549 | 1 | |
Deletion | Chr10 | 14326181 | 14326181 | 1 | |
Deletion | Chr3 | 17600721 | 17600724 | 4 | OsKitaake03g216200 |
Deletion | Chr8 | 20630410 | 20630410 | 1 | |
Deletion | Chr8 | 21513661 | 21513661 | 1 | |
Deletion | Chr4 | 22766864 | 22766865 | 2 | |
Deletion | Chr3 | 23355417 | 23355417 | 1 | |
Deletion | Chr11 | 24492635 | 24492636 | 2 | 2 |
Deletion | Chr2 | 24604470 | 24604470 | 1 | |
Deletion | Chr12 | 26218687 | 26218687 | 1 | |
Deletion | Chr7 | 27704671 | 27704671 | 1 | 2 |
Deletion | Chr8 | 29000794 | 29000796 | 3 | |
Deletion | Chr7 | 29502004 | 29502004 | 1 | |
Deletion | Chr4 | 32785711 | 32785711 | 1 |
Insertions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr2 | 2125460 | 2125462 | 1 | |
Insertion | Chr3 | 22862420 | 22862486 | 65 | |
Insertion | Chr7 | 7911652 | 7911654 | 1 | |
Insertion | Chr8 | 9393884 | 9393888 | 3 | |
Insertion | Chr8 | 19192001 | 19192004 | 2 | |
Insertion | Chr9 | 2927565 | 2927568 | 2 | |
Insertion | Chr10 | 19758301 | 19758303 | 1 | |
Insertion | Chr2 | 3620023 | 3620025 | 1 | |
Insertion | Chr2 | 8996546 | 8996548 | 1 | |
Insertion | Chr3 | 25559068 | 25559072 | 3 | OsKitaake03g270100 ![]() |
Insertion | Chr3 | 30198965 | 30198967 | 1 | |
Insertion | Chr4 | 24395771 | 24395773 | 1 | |
Insertion | Chr7 | 12687315 | 12687317 | 1 | |
Insertion | Chr7 | 25126474 | 25126476 | 1 | |
Insertion | Chr9 | 12731453 | 12731455 | 1 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr1 | 91467 | 91619 | OsKitaake01g001200 |
Inversion | Chr7 | 666997 | 667088 | |
Inversion | Chr6 | 3344255 | 3344471 | OsKitaake06g046550 |
Inversion | Chr11 | 18920266 | 18920340 | |
Inversion | Chr5 | 22801234 | 22801395 | |
Inversion | Chr1 | 23356354 | 23356484 | |
Inversion | Chr1 | 32394899 | 32394960 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr12 | 1445027 | Chr4 | 2480744 | OsKitaake04g015200 |
Translocation | Chr12 | 1456608 | Chr4 | 2480746 | OsKitaake04g015200 |