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Mutant Information 

Mutant NameFN4404-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4404-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr12364998G-AHET
SBS  Chr110199046G-AHET
SBS  Chr110515977C-GHET
SBS  Chr114364605G-AHET
SBS  Chr114860304C-THETOsKitaake01g141550
SBS  Chr127011195G-THET
SBS  Chr141111064C-GHET
SBS  Chr143483672C-THET
SBS  Chr144283866G-AHET
SBS  Chr25192232T-CHET
SBS  Chr218532108G-THET
SBS  Chr221534620A-GHETOsKitaake02g208200
SBS  Chr225517503T-AHET
SBS  Chr235230534A-GHET
SBS  Chr34786312G-AHET
SBS  Chr36036146T-CHET
SBS  Chr319216247G-AHET
SBS  Chr319806529G-THET
SBS  Chr49010001C-THOMO
SBS  Chr414537100G-AHET
SBS  Chr416372089C-THET
SBS  Chr418366687A-THET
SBS  Chr431472287G-THET
SBS  Chr432149994G-AHOMO
SBS  Chr435305523T-GHET
SBS  Chr5409226G-AHET
SBS  Chr51042896C-THET
SBS  Chr510331095G-CHET
SBS  Chr510986326T-CHET
SBS  Chr510988527G-AHET
SBS  Chr514300347G-THET
SBS  Chr517948684A-GHET
SBS  Chr520919496A-CHET
SBS  Chr521549876C-THET
SBS  Chr65344047A-THET
SBS  Chr69877328A-GHET
SBS  Chr618586552G-AHOMO
SBS  Chr624551053A-THET
SBS  Chr74794643A-THET
SBS  Chr711718155A-CHET
SBS  Chr717300817T-CHET
SBS  Chr717715434G-AHET
SBS  Chr725607100C-THET
SBS  Chr726422482G-AHET
SBS  Chr812898529C-THET
SBS  Chr817554560G-CHETOsKitaake08g131700
SBS  Chr820784539G-THET
SBS  Chr97335938C-THET
SBS  Chr917837416C-AHET
SBS  Chr1012519840T-AHET
SBS  Chr1023239148C-THET
SBS  Chr111567611C-AHET
SBS  Chr118364997G-AHOMO
SBS  Chr118906938T-CHET
SBS  Chr1114187199T-GHET
SBS  Chr1121512477C-THET
SBS  Chr1124775784T-CHET
SBS  Chr123162362G-THET
SBS  Chr126499857A-GHET
SBS  Chr128293173C-THET
SBS  Chr1211655849C-THET
SBS  Chr1213267462A-THOMO

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr56065336065364OsKitaake05g006400
Deletion  Chr5148798714879915
Deletion  Chr3231248923124891
Deletion  Chr9330738033073889
Deletion  Chr8332773633277361
Deletion  Chr7463511346351131
Deletion  Chr2560151756015182
Deletion  Chr5657239065723901
Deletion  Chr116933282693330221
Deletion  Chr9945454994545491
Deletion  Chr1014326181143261811
Deletion  Chr317600721176007244OsKitaake03g216200
Deletion  Chr820630410206304101
Deletion  Chr821513661215136611
Deletion  Chr422766864227668652
Deletion  Chr323355417233554171
Deletion  Chr11244926352449263622
Deletion  Chr224604470246044701
Deletion  Chr1226218687262186871
Deletion  Chr7277046712770467112
Deletion  Chr829000794290007963
Deletion  Chr729502004295020041
Deletion  Chr432785711327857111

Insertions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr2212546021254621
Insertion  Chr3228624202286248665
Insertion  Chr7791165279116541
Insertion  Chr8939388493938883
Insertion  Chr819192001191920042
Insertion  Chr9292756529275682
Insertion  Chr1019758301197583031
Insertion  Chr2362002336200251
Insertion  Chr2899654689965481
Insertion  Chr325559068255590723OsKitaake03g270100 image
Insertion  Chr330198965301989671
Insertion  Chr424395771243957731
Insertion  Chr712687315126873171
Insertion  Chr725126474251264761
Insertion  Chr912731453127314551

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr19146791619OsKitaake01g001200
Inversion  Chr7666997667088
Inversion  Chr633442553344471OsKitaake06g046550
Inversion  Chr111892026618920340
Inversion  Chr52280123422801395
Inversion  Chr12335635423356484
Inversion  Chr13239489932394960

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr121445027Chr42480744OsKitaake04g015200
Translocation  Chr121456608Chr42480746OsKitaake04g015200