Search Kitaake

Mutant Information

Mutant Name	FN4405-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4405-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5304514 G-A HOMO
SBS Chr1 22584253 C-T HOMO
SBS Chr1 27701553 G-A HET
SBS Chr1 32614017 C-G HET
SBS Chr1 32922640 T-A HET
SBS Chr1 36509911 T-A HET
SBS Chr1 39157267 A-T HOMO
SBS Chr1 41727224 A-G HET
SBS Chr2 10916738 C-T HET
SBS Chr2 10916740 C-T HET
SBS Chr2 14268718 T-C HET
SBS Chr2 25730289 G-A HET
SBS Chr3 7854347 T-C HOMO
SBS Chr3 14574143 T-C HET
SBS Chr3 23493798 G-T HET OsKitaake03g252600
SBS Chr3 24689435 C-T HET
SBS Chr3 25197192 C-T HOMO
SBS Chr3 37635746 T-C HET
SBS Chr4 10948009 C-T HET
SBS Chr4 10948010 C-T HET
SBS Chr4 20310835 C-T HET
SBS Chr4 20768693 G-A HET
SBS Chr4 32824205 C-A HOMO
SBS Chr4 35837584 T-C HET
SBS Chr5 10322414 C-T HET
SBS Chr5 18535059 G-A HET
SBS Chr5 21626603 C-T HET
SBS Chr6 10604233 G-A HET OsKitaake06g119200
SBS Chr6 17253924 G-C HET
SBS Chr7 17424971 T-A HET
SBS Chr7 24040554 G-T HOMO
SBS Chr7 25403994 C-T HOMO
SBS Chr7 25403995 C-T HOMO
SBS Chr8 14057701 A-G HET
SBS Chr8 29291044 C-T HOMO
SBS Chr9 4192902 G-A HET
SBS Chr9 5549424 C-G HET
SBS Chr10 2530293 C-T HET
SBS Chr10 8826262 A-T HET
SBS Chr10 18430138 G-A HET
SBS Chr11 9611002 C-T HOMO
SBS Chr11 9611003 A-T HOMO
SBS Chr11 22166674 A-T HOMO
SBS Chr12 825093 A-G HET

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 137001 166000 29000
Deletion Chr4 496308 496311 4 OsKitaake04g003600
Deletion Chr5 2604748 2604752 5
Deletion Chr12 3343917 3343926 10
Deletion Chr10 4812015 4812015 1
Deletion Chr12 5246001 5275000 29000 OsKitaake12g066400
Deletion Chr4 5485376 5485386 11
Deletion Chr1 6557324 6557326 3
Deletion Chr4 8855001 8855003 3
Deletion Chr9 9525934 9525941 8
Deletion Chr7 10596343 10596343 1
Deletion Chr10 12906926 12906941 16
Deletion Chr10 16318456 16318464 9 OsKitaake10g110000
Deletion Chr7 16731257 16731257 1
Deletion Chr7 17644985 17644985 1
Deletion Chr11 18905894 18905896 3
Deletion Chr5 19028837 19028848 12
Deletion Chr1 20735758 20735773 16
Deletion Chr8 23003332 23003332 1
Deletion Chr3 24568291 24568299 9
Deletion Chr11 25160696 25160696 1
Deletion Chr6 25262932 25262936 5
Deletion Chr7 25593544 25593546 3
Deletion Chr2 26562366 26562366 1
Deletion Chr3 28212278 28212279 2
Deletion Chr4 30122001 30164000 42000 5
Deletion Chr2 33117416 33117416 1
Deletion Chr4 33773342 33773350 9
Deletion Chr3 34841722 34841727 6 OsKitaake03g380100
Deletion Chr3 34918001 34934000 16000 3

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 15671977 15671979 1
Insertion Chr2 28780476 28780478 1
Insertion Chr3 2145872 2145875 2
Insertion Chr5 9545449 9545557 107
Insertion Chr6 30713080 30713082 1
Insertion Chr10 10882064 10882067 2
Insertion Chr1 2592666 2592668 1
Insertion Chr1 7295587 7295589 1
Insertion Chr2 5727401 5727403 1
Insertion Chr7 21537387 21537389 1
Insertion Chr10 23487841 23487844 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3104138 3104237
Inversion Chr11 14981775 14982015
Inversion Chr6 15063607 15063767
Inversion Chr5 23344664 23344773
Inversion Chr6 23790864 24101239 2
Inversion Chr6 23790876 24101248 2
Inversion Chr5 28484200 28484334
Inversion Chr11 28670864 28671093
Inversion Chr2 31833435 32700632
Inversion Chr2 31842892 32700654

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 170404 Chr2 15258527 OsKitaake02g159100
Translocation Chr4 30122454 Chr2 15258525 OsKitaake02g159100
Translocation Chr4 30164375 Chr2 15258137 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5304514	G-A	HOMO
SBS	Chr1	22584253	C-T	HOMO
SBS	Chr1	27701553	G-A	HET
SBS	Chr1	32614017	C-G	HET
SBS	Chr1	32922640	T-A	HET
SBS	Chr1	36509911	T-A	HET
SBS	Chr1	39157267	A-T	HOMO
SBS	Chr1	41727224	A-G	HET
SBS	Chr2	10916738	C-T	HET
SBS	Chr2	10916740	C-T	HET
SBS	Chr2	14268718	T-C	HET
SBS	Chr2	25730289	G-A	HET
SBS	Chr3	7854347	T-C	HOMO
SBS	Chr3	14574143	T-C	HET
SBS	Chr3	23493798	G-T	HET		OsKitaake03g252600
SBS	Chr3	24689435	C-T	HET
SBS	Chr3	25197192	C-T	HOMO
SBS	Chr3	37635746	T-C	HET
SBS	Chr4	10948009	C-T	HET
SBS	Chr4	10948010	C-T	HET
SBS	Chr4	20310835	C-T	HET
SBS	Chr4	20768693	G-A	HET
SBS	Chr4	32824205	C-A	HOMO
SBS	Chr4	35837584	T-C	HET
SBS	Chr5	10322414	C-T	HET
SBS	Chr5	18535059	G-A	HET
SBS	Chr5	21626603	C-T	HET
SBS	Chr6	10604233	G-A	HET		OsKitaake06g119200
SBS	Chr6	17253924	G-C	HET
SBS	Chr7	17424971	T-A	HET
SBS	Chr7	24040554	G-T	HOMO
SBS	Chr7	25403994	C-T	HOMO
SBS	Chr7	25403995	C-T	HOMO
SBS	Chr8	14057701	A-G	HET
SBS	Chr8	29291044	C-T	HOMO
SBS	Chr9	4192902	G-A	HET
SBS	Chr9	5549424	C-G	HET
SBS	Chr10	2530293	C-T	HET
SBS	Chr10	8826262	A-T	HET
SBS	Chr10	18430138	G-A	HET
SBS	Chr11	9611002	C-T	HOMO
SBS	Chr11	9611003	A-T	HOMO
SBS	Chr11	22166674	A-T	HOMO
SBS	Chr12	825093	A-G	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	137001	166000	29000
Deletion	Chr4	496308	496311	4	OsKitaake04g003600
Deletion	Chr5	2604748	2604752	5
Deletion	Chr12	3343917	3343926	10
Deletion	Chr10	4812015	4812015	1
Deletion	Chr12	5246001	5275000	29000	OsKitaake12g066400
Deletion	Chr4	5485376	5485386	11
Deletion	Chr1	6557324	6557326	3
Deletion	Chr4	8855001	8855003	3
Deletion	Chr9	9525934	9525941	8
Deletion	Chr7	10596343	10596343	1
Deletion	Chr10	12906926	12906941	16
Deletion	Chr10	16318456	16318464	9	OsKitaake10g110000
Deletion	Chr7	16731257	16731257	1
Deletion	Chr7	17644985	17644985	1
Deletion	Chr11	18905894	18905896	3
Deletion	Chr5	19028837	19028848	12
Deletion	Chr1	20735758	20735773	16
Deletion	Chr8	23003332	23003332	1
Deletion	Chr3	24568291	24568299	9
Deletion	Chr11	25160696	25160696	1
Deletion	Chr6	25262932	25262936	5
Deletion	Chr7	25593544	25593546	3
Deletion	Chr2	26562366	26562366	1
Deletion	Chr3	28212278	28212279	2
Deletion	Chr4	30122001	30164000	42000	5
Deletion	Chr2	33117416	33117416	1
Deletion	Chr4	33773342	33773350	9
Deletion	Chr3	34841722	34841727	6	OsKitaake03g380100
Deletion	Chr3	34918001	34934000	16000	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3104138	3104237
Inversion	Chr11	14981775	14982015
Inversion	Chr6	15063607	15063767
Inversion	Chr5	23344664	23344773
Inversion	Chr6	23790864	24101239	2
Inversion	Chr6	23790876	24101248	2
Inversion	Chr5	28484200	28484334
Inversion	Chr11	28670864	28671093
Inversion	Chr2	31833435	32700632
Inversion	Chr2	31842892	32700654

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes