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Mutant Information

Mutant Name	FN441-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN441-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14017873 C-T Hetero INTERGENIC
SBS Chr1 26525026 A-G Homo INTERGENIC
SBS Chr1 27398307 A-G Hetero INTERGENIC
SBS Chr1 35999745 C-T Homo INTERGENIC
SBS Chr2 17781711 C-T Hetero INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 5745267 C-T Hetero UTR_5_PRIME
SBS Chr3 30876607 A-G Homo INTRON
SBS Chr3 36584506 C-T Hetero INTERGENIC
SBS Chr4 20245956 G-A Homo INTERGENIC
SBS Chr4 20246077 A-G Homo INTERGENIC
SBS Chr4 20246086 A-G Homo INTERGENIC
SBS Chr5 17493604 G-A Hetero INTRON
SBS Chr5 17539632 G-A Hetero INTERGENIC
SBS Chr5 18291499 T-A Hetero INTERGENIC
SBS Chr5 18291500 C-T Hetero INTERGENIC
SBS Chr5 18291516 G-C Hetero INTERGENIC
SBS Chr6 8815706 G-A Homo INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 13264366 C-T Homo INTRON
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 170983 T-A Hetero INTERGENIC
SBS Chr8 3374764 T-A Homo INTERGENIC
SBS Chr8 6470550 A-C Hetero INTERGENIC
SBS Chr8 9644413 T-A Hetero INTRON
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 22467557 A-T Hetero INTERGENIC
SBS Chr9 1151939 G-A Hetero INTERGENIC
SBS Chr9 3301500 T-C Hetero INTERGENIC
SBS Chr9 14057771 A-T Homo INTERGENIC
SBS Chr9 20951688 C-T Hetero INTERGENIC
SBS Chr10 17417782 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g118600
SBS Chr10 17588799 T-A Hetero INTRON
SBS Chr10 17588800 G-T Hetero INTRON
SBS Chr11 2060808 C-G Hetero INTERGENIC
SBS Chr11 6121764 G-A Hetero INTERGENIC
SBS Chr12 12246345 C-T Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 510765 510766 1
Deletion Chr8 4149445 4149446 1
Deletion Chr8 5156340 5156344 4
Deletion Chr1 5597001 5613000 15999 2
Deletion Chr1 5738296 5738298 2
Deletion Chr9 11085662 11085671 9
Deletion Chr6 11659035 11659041 6
Deletion Chr2 12465618 12465621 3
Deletion Chr2 12558278 12558282 4
Deletion Chr2 12631694 12631695 1
Deletion Chr6 13587123 13587130 7
Deletion Chr10 18471560 18471561 1
Deletion Chr1 19692393 19692394 1
Deletion Chr11 22932166 22932173 7
Deletion Chr2 28606001 28668000 61999 5
Deletion Chr2 32531473 32531479 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41466522 41466530 7
Insertion Chr2 4019689 4019692 2
Insertion Chr5 21888885 21888888 2
Insertion Chr7 26091602 26091605 2
Insertion Chr10 21401446 21401449 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 4321446 4557084 2
Inversion Chr3 4321461 4557086 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14017873	C-T	Hetero	INTERGENIC
SBS	Chr1	26525026	A-G	Homo	INTERGENIC
SBS	Chr1	27398307	A-G	Hetero	INTERGENIC
SBS	Chr1	35999745	C-T	Homo	INTERGENIC
SBS	Chr2	17781711	C-T	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	5745267	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	30876607	A-G	Homo	INTRON
SBS	Chr3	36584506	C-T	Hetero	INTERGENIC
SBS	Chr4	20245956	G-A	Homo	INTERGENIC
SBS	Chr4	20246077	A-G	Homo	INTERGENIC
SBS	Chr4	20246086	A-G	Homo	INTERGENIC
SBS	Chr5	17493604	G-A	Hetero	INTRON
SBS	Chr5	17539632	G-A	Hetero	INTERGENIC
SBS	Chr5	18291499	T-A	Hetero	INTERGENIC
SBS	Chr5	18291500	C-T	Hetero	INTERGENIC
SBS	Chr5	18291516	G-C	Hetero	INTERGENIC
SBS	Chr6	8815706	G-A	Homo	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	13264366	C-T	Homo	INTRON
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	170983	T-A	Hetero	INTERGENIC
SBS	Chr8	3374764	T-A	Homo	INTERGENIC
SBS	Chr8	6470550	A-C	Hetero	INTERGENIC
SBS	Chr8	9644413	T-A	Hetero	INTRON
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	22467557	A-T	Hetero	INTERGENIC
SBS	Chr9	1151939	G-A	Hetero	INTERGENIC
SBS	Chr9	3301500	T-C	Hetero	INTERGENIC
SBS	Chr9	14057771	A-T	Homo	INTERGENIC
SBS	Chr9	20951688	C-T	Hetero	INTERGENIC
SBS	Chr10	17417782	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g118600
SBS	Chr10	17588799	T-A	Hetero	INTRON
SBS	Chr10	17588800	G-T	Hetero	INTRON
SBS	Chr11	2060808	C-G	Hetero	INTERGENIC
SBS	Chr11	6121764	G-A	Hetero	INTERGENIC
SBS	Chr12	12246345	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	510765	510766	1
Deletion	Chr8	4149445	4149446	1
Deletion	Chr8	5156340	5156344	4
Deletion	Chr1	5597001	5613000	15999	2
Deletion	Chr1	5738296	5738298	2
Deletion	Chr9	11085662	11085671	9
Deletion	Chr6	11659035	11659041	6
Deletion	Chr2	12465618	12465621	3
Deletion	Chr2	12558278	12558282	4
Deletion	Chr2	12631694	12631695	1
Deletion	Chr6	13587123	13587130	7
Deletion	Chr10	18471560	18471561	1
Deletion	Chr1	19692393	19692394	1
Deletion	Chr11	22932166	22932173	7
Deletion	Chr2	28606001	28668000	61999	5
Deletion	Chr2	32531473	32531479	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4321446	4557084	2
Inversion	Chr3	4321461	4557086	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes