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Mutant Information

Mutant Name	FN4413-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4413-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2281728 A-T HET
SBS Chr1 33041030 C-T HET
SBS Chr1 35022912 G-T HET
SBS Chr1 35022913 A-T HET
SBS Chr1 38114559 G-A HET
SBS Chr1 41256157 G-C HET OsKitaake01g450700
SBS Chr1 41274583 A-G HET
SBS Chr2 5203603 C-A HET
SBS Chr2 11234847 G-A HET
SBS Chr2 24900087 G-A HOMO
SBS Chr2 33728588 A-G HET
SBS Chr3 9551992 A-G HET
SBS Chr3 11001269 G-A HOMO
SBS Chr3 15742756 G-A HET
SBS Chr3 15742757 T-A HET
SBS Chr3 30392584 T-A HOMO
SBS Chr4 4994827 T-A HOMO
SBS Chr4 15146008 C-T HOMO
SBS Chr4 35223130 C-T HET
SBS Chr5 7372821 C-G HET
SBS Chr5 9183363 T-C HET
SBS Chr5 18177047 T-A HET
SBS Chr5 18177048 C-A HET
SBS Chr5 27346377 C-T HET
SBS Chr6 11764751 T-C HOMO
SBS Chr6 11993321 G-A HOMO
SBS Chr6 18749128 T-A HOMO
SBS Chr7 5870819 G-A HET
SBS Chr7 16704420 A-G HET
SBS Chr7 20104023 G-A HET
SBS Chr7 21592855 G-T HET
SBS Chr8 7974646 A-G HET
SBS Chr8 8709110 C-T HET
SBS Chr8 17552891 G-A HOMO
SBS Chr9 13697106 C-T HOMO
SBS Chr9 15669949 T-A HET
SBS Chr9 22557403 C-T HET OsKitaake09g206500
SBS Chr10 3854011 C-T HOMO
SBS Chr10 8845867 T-C HOMO
SBS Chr11 21733862 C-T HET
SBS Chr11 22286886 T-A HET
SBS Chr11 22286890 G-A HET
SBS Chr12 16356023 A-G HOMO

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1051013 1051017 5
Deletion Chr10 3110498 3110499 2
Deletion Chr8 4002697 4002697 1
Deletion Chr11 4642469 4642471 3
Deletion Chr9 5033326 5033326 1
Deletion Chr5 8661001 8672000 11000
Deletion Chr12 11217623 11217624 2
Deletion Chr5 11688001 11841000 153000 7
Deletion Chr5 11848001 11872000 24000
Deletion Chr5 11883001 12092000 209000 8
Deletion Chr5 12095001 12197000 102000 OsKitaake05g097700
Deletion Chr2 12480644 12480645 2
Deletion Chr10 17765001 17800000 35000 6
Deletion Chr10 17807001 17890000 83000 15
Deletion Chr10 17893001 17907000 14000 4
Deletion Chr7 23484001 23626000 142000 17
Deletion Chr7 23627001 23713000 86000 11
Deletion Chr8 26669208 26669209 2
Deletion Chr4 30613947 30613947 1

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31258411 31258413 1
Insertion Chr1 35440056 35440058 1
Insertion Chr4 22223913 22223915 1
Insertion Chr10 18209206 18209208 1
Insertion Chr11 6920713 6920716 2
Insertion Chr11 17634472 17634474 1
Insertion Chr12 17167385 17167387 1
Insertion Chr1 12445387 12445389 1
Insertion Chr1 14759949 14759951 1
Insertion Chr1 24163734 24163736 1
Insertion Chr4 29765558 29765561 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1327948 1450617
Inversion Chr8 1327950 1450617
Inversion Chr11 15481670 16346301
Inversion Chr7 22244677 22398980
Inversion Chr7 22244686 22398981

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1504110 Chr6 1121416
Translocation Chr9 1504216 Chr6 1122056
Translocation Chr12 5941818 Chr5 10649998
Translocation Chr5 10652295 Chr1 38831235 OsKitaake01g416100
Translocation Chr5 10652670 Chr1 38831231 OsKitaake01g416100
Translocation Chr10 16561814 Chr9 9607291
Translocation Chr10 16561834 Chr9 9606874
Translocation Chr11 21022978 Chr5 11370397
Translocation Chr11 21026708 Chr5 10652678

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2281728	A-T	HET
SBS	Chr1	33041030	C-T	HET
SBS	Chr1	35022912	G-T	HET
SBS	Chr1	35022913	A-T	HET
SBS	Chr1	38114559	G-A	HET
SBS	Chr1	41256157	G-C	HET		OsKitaake01g450700
SBS	Chr1	41274583	A-G	HET
SBS	Chr2	5203603	C-A	HET
SBS	Chr2	11234847	G-A	HET
SBS	Chr2	24900087	G-A	HOMO
SBS	Chr2	33728588	A-G	HET
SBS	Chr3	9551992	A-G	HET
SBS	Chr3	11001269	G-A	HOMO
SBS	Chr3	15742756	G-A	HET
SBS	Chr3	15742757	T-A	HET
SBS	Chr3	30392584	T-A	HOMO
SBS	Chr4	4994827	T-A	HOMO
SBS	Chr4	15146008	C-T	HOMO
SBS	Chr4	35223130	C-T	HET
SBS	Chr5	7372821	C-G	HET
SBS	Chr5	9183363	T-C	HET
SBS	Chr5	18177047	T-A	HET
SBS	Chr5	18177048	C-A	HET
SBS	Chr5	27346377	C-T	HET
SBS	Chr6	11764751	T-C	HOMO
SBS	Chr6	11993321	G-A	HOMO
SBS	Chr6	18749128	T-A	HOMO
SBS	Chr7	5870819	G-A	HET
SBS	Chr7	16704420	A-G	HET
SBS	Chr7	20104023	G-A	HET
SBS	Chr7	21592855	G-T	HET
SBS	Chr8	7974646	A-G	HET
SBS	Chr8	8709110	C-T	HET
SBS	Chr8	17552891	G-A	HOMO
SBS	Chr9	13697106	C-T	HOMO
SBS	Chr9	15669949	T-A	HET
SBS	Chr9	22557403	C-T	HET		OsKitaake09g206500
SBS	Chr10	3854011	C-T	HOMO
SBS	Chr10	8845867	T-C	HOMO
SBS	Chr11	21733862	C-T	HET
SBS	Chr11	22286886	T-A	HET
SBS	Chr11	22286890	G-A	HET
SBS	Chr12	16356023	A-G	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1051013	1051017	5
Deletion	Chr10	3110498	3110499	2
Deletion	Chr8	4002697	4002697	1
Deletion	Chr11	4642469	4642471	3
Deletion	Chr9	5033326	5033326	1
Deletion	Chr5	8661001	8672000	11000
Deletion	Chr12	11217623	11217624	2
Deletion	Chr5	11688001	11841000	153000	7
Deletion	Chr5	11848001	11872000	24000
Deletion	Chr5	11883001	12092000	209000	8
Deletion	Chr5	12095001	12197000	102000	OsKitaake05g097700
Deletion	Chr2	12480644	12480645	2
Deletion	Chr10	17765001	17800000	35000	6
Deletion	Chr10	17807001	17890000	83000	15
Deletion	Chr10	17893001	17907000	14000	4
Deletion	Chr7	23484001	23626000	142000	17
Deletion	Chr7	23627001	23713000	86000	11
Deletion	Chr8	26669208	26669209	2
Deletion	Chr4	30613947	30613947	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1327948	1450617
Inversion	Chr8	1327950	1450617
Inversion	Chr11	15481670	16346301
Inversion	Chr7	22244677	22398980
Inversion	Chr7	22244686	22398981

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes