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| Mutant Information |
|---|
| Mutant Name | FN4417-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4417-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 49
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17362131 | C-T | HET | ||
| SBS | Chr2 | 5591343 | C-G | HET | ||
| SBS | Chr2 | 21801848 | A-T | HET | ||
| SBS | Chr3 | 15307053 | C-T | HET | ||
| SBS | Chr3 | 23791540 | G-A | HOMO | ||
| SBS | Chr3 | 27484640 | G-A | HOMO | ||
| SBS | Chr3 | 30794075 | G-A | HET | ||
| SBS | Chr4 | 1686169 | C-T | HET | ||
| SBS | Chr4 | 28287681 | T-C | HET | ||
| SBS | Chr4 | 30284845 | C-T | HET | ||
| SBS | Chr5 | 5950321 | G-A | HET | ||
| SBS | Chr5 | 17185985 | A-G | HET | ||
| SBS | Chr5 | 17615888 | G-T | HOMO | ||
| SBS | Chr5 | 18317800 | G-A | HET | ||
| SBS | Chr6 | 16664876 | A-T | HOMO | ||
| SBS | Chr6 | 17265742 | C-A | HOMO | ||
| SBS | Chr6 | 19008293 | C-T | HOMO | ||
| SBS | Chr6 | 24624064 | C-T | HET | OsKitaake06g218300 | |
| SBS | Chr6 | 28275388 | A-G | HOMO | ||
| SBS | Chr7 | 6455021 | C-T | HOMO | ||
| SBS | Chr7 | 6651900 | G-A | HET | ||
| SBS | Chr7 | 18746724 | C-A | HET | ||
| SBS | Chr7 | 20364366 | C-T | HET | ||
| SBS | Chr7 | 27853548 | A-T | HOMO | ||
| SBS | Chr8 | 6486571 | C-G | HOMO | ||
| SBS | Chr8 | 11032323 | G-A | HET | ||
| SBS | Chr8 | 12570123 | C-T | HOMO | ||
| SBS | Chr9 | 1023450 | T-C | HET | ||
| SBS | Chr9 | 6356004 | G-T | HET | ||
| SBS | Chr9 | 14480297 | A-T | HET | ||
| SBS | Chr9 | 18088708 | G-T | HET | ||
| SBS | Chr9 | 21450705 | G-T | HOMO | ||
| SBS | Chr10 | 8770795 | T-G | HET | ||
| SBS | Chr10 | 8850178 | C-T | HET | ||
| SBS | Chr10 | 8850179 | C-T | HET | ||
| SBS | Chr10 | 8888402 | C-G | HET | ||
| SBS | Chr11 | 65416 | G-C | HET | ||
| SBS | Chr11 | 541295 | G-A | HET | ||
| SBS | Chr11 | 9342208 | A-G | HOMO | ||
| SBS | Chr11 | 11960885 | G-A | HOMO | ||
| SBS | Chr11 | 13771705 | T-G | HOMO | ||
| SBS | Chr11 | 20170841 | C-T | HOMO | ||
| SBS | Chr11 | 26815703 | C-A | HET | ||
| SBS | Chr11 | 27091612 | T-C | HET | ||
| SBS | Chr12 | 14190702 | C-T | HET | ||
| SBS | Chr12 | 15148099 | T-A | HET | ||
| SBS | Chr12 | 15498755 | C-T | HET | ||
| SBS | Chr12 | 16600268 | G-A | HET | ||
| SBS | Chr12 | 17820077 | C-T | HET |
Deletions: 29
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 276948 | 276948 | 1 | OsKitaake08g003800 |
| Deletion | Chr10 | 1102256 | 1102275 | 20 | |
| Deletion | Chr2 | 1698345 | 1698345 | 1 | |
| Deletion | Chr7 | 3207783 | 3207783 | 1 | |
| Deletion | Chr2 | 3282699 | 3282717 | 19 | OsKitaake02g047700 |
| Deletion | Chr1 | 5136618 | 5136618 | 1 | |
| Deletion | Chr9 | 5970384 | 5970385 | 2 | |
| Deletion | Chr4 | 7224988 | 7224988 | 1 | |
| Deletion | Chr1 | 7975749 | 7975779 | 31 | |
| Deletion | Chr3 | 9094623 | 9094631 | 9 | |
| Deletion | Chr11 | 10692088 | 10692100 | 13 | |
| Deletion | Chr9 | 11983196 | 11983202 | 7 | |
| Deletion | Chr7 | 12783064 | 12783066 | 3 | |
| Deletion | Chr5 | 14523877 | 14523877 | 1 | |
| Deletion | Chr4 | 18926195 | 18926195 | 1 | |
| Deletion | Chr6 | 19002952 | 19002952 | 1 | |
| Deletion | Chr2 | 20753913 | 20753915 | 3 | |
| Deletion | Chr1 | 22286586 | 22286590 | 5 | |
| Deletion | Chr5 | 22501497 | 22501502 | 6 | |
| Deletion | Chr12 | 22976454 | 22976454 | 1 | |
| Deletion | Chr7 | 24092837 | 24092837 | 1 | OsKitaake07g213200 |
| Deletion | Chr3 | 26492863 | 26492863 | 1 | |
| Deletion | Chr3 | 27607642 | 27607645 | 4 | |
| Deletion | Chr8 | 27994097 | 27994106 | 10 | OsKitaake08g234500 |
| Deletion | Chr7 | 28296814 | 28296814 | 1 | OsKitaake07g267700 |
| Deletion | Chr8 | 29161177 | 29161179 | 3 | |
| Deletion | Chr4 | 29675206 | 29675206 | 1 | OsKitaake04g228000 |
| Deletion | Chr1 | 30485868 | 30485868 | 1 | |
| Deletion | Chr4 | 33882665 | 33882665 | 1 | OsKitaake04g282000 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 36960550 | 36960599 | 48 | |
| Insertion | Chr6 | 22358258 | 22358260 | 1 | |
| Insertion | Chr2 | 33997690 | 33997692 | 1 | |
| Insertion | Chr3 | 15910336 | 15910338 | 1 | |
| Insertion | Chr5 | 22228972 | 22228974 | 1 | |
| Insertion | Chr7 | 24265846 | 24265849 | 2 | |
| Insertion | Chr12 | 26341626 | 26341633 | 6 | OsKitaake12g218700  |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 4887058 | 4887463 | |
| Inversion | Chr1 | 18697273 | 18697484 | |
| Inversion | Chr9 | 19209124 | 19209382 | |
| Inversion | Chr3 | 28373357 | 28373449 | |
| Inversion | Chr2 | 30894384 | 30894515 | OsKitaake02g315200 |
| Inversion | Chr1 | 34240319 | 34240569 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6467030 | Chr8 | 25992834 | |
| Translocation | Chr9 | 6467689 | Chr8 | 25992855 | |
| Translocation | Chr9 | 13319779 | Chr7 | 9778856 | |
| Translocation | Chr9 | 13323978 | Chr7 | 9777717 | |
| Translocation | Chr8 | 25908267 | Chr1 | 3878811 | |
| Translocation | Chr8 | 25908270 | Chr1 | 3878815 |