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Mutant Information

Mutant Name	FN442-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN442-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23483872 A-T Hetero INTERGENIC
SBS Chr1 30605716 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g303100
SBS Chr2 31336888 C-G Homo SYNONYMOUS_CODING
SBS Chr2 35853832 G-A Hetero INTERGENIC
SBS Chr3 23024211 A-G Homo INTERGENIC
SBS Chr3 37243271 A-G Homo INTERGENIC
SBS Chr4 1427067 G-A Hetero INTERGENIC
SBS Chr4 2293326 G-A Hetero INTERGENIC
SBS Chr4 2904598 G-A Homo INTERGENIC
SBS Chr4 19340429 G-T Hetero INTERGENIC
SBS Chr4 23185367 G-A Homo INTERGENIC
SBS Chr4 23204246 A-G Hetero INTRON
SBS Chr4 28749177 T-C Homo INTERGENIC
SBS Chr4 34425830 T-C Homo INTERGENIC
SBS Chr5 2807747 T-C Hetero INTRON
SBS Chr5 4896034 A-C Hetero INTERGENIC
SBS Chr5 14315955 T-C Hetero INTERGENIC
SBS Chr5 21014505 C-T Hetero INTERGENIC
SBS Chr7 4320492 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g054400
SBS Chr7 16370554 G-T Hetero INTERGENIC
SBS Chr7 18712723 C-T Homo INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr9 21999846 T-A Homo INTERGENIC
SBS Chr10 17447339 G-C Hetero INTERGENIC
SBS Chr11 12537785 G-A Homo INTERGENIC
SBS Chr11 25882628 A-G Hetero INTERGENIC
SBS Chr12 4121366 G-T Homo NON_SYNONYMOUS_CODING OsKitaake12g056200
SBS Chr12 12464590 G-T Hetero INTERGENIC
SBS Chr12 15831259 A-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 22001 87000 64999 4
Deletion Chr5 296908 296913 5
Deletion Chr7 961038 961048 10
Deletion Chr4 2700001 2724000 23999
Deletion Chr11 2726751 2726752 1
Deletion Chr4 2779001 2912000 132999
Deletion Chr4 2835049 2835053 4
Deletion Chr9 4219001 4233000 13999 OsKitaake09g023100
Deletion Chr12 8582526 8582543 17
Deletion Chr3 8746097 8746105 8
Deletion Chr12 9081915 9081926 11
Deletion Chr9 9412893 9412897 4
Deletion Chr4 11721632 11721634 2
Deletion Chr1 11735798 11735800 2
Deletion Chr1 11932099 11932100 1
Deletion Chr7 13805869 13805870 1
Deletion Chr1 20957247 20957248 1 OsKitaake01g205100
Deletion Chr12 23958505 23958507 2
Deletion Chr1 28936001 28956000 19999 OsKitaake01g281000
Deletion Chr4 29392852 29392855 3
Deletion Chr3 33363072 33363076 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24283863 24283867 3
Insertion Chr6 13543372 13543375 2
Insertion Chr8 382122 382125 2
Insertion Chr12 26049535 26049537 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2948791 2952078
Inversion Chr5 2948801 2952080
Inversion Chr9 4194389 4219327
Inversion Chr9 4194391 4233217
Inversion Chr1 23347304 23772450 OsKitaake01g228000
Inversion Chr1 23347313 23772467 OsKitaake01g228000

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2778230 Chr3 13685255
Translocation Chr4 2911936 Chr1 15947833
Translocation Chr5 13053412 Chr3 13684622
Translocation Chr5 13053420 Chr3 13685247
Translocation Chr11 21672294 Chr10 23985106 OsKitaake10g208000
Translocation Chr10 23985137 Chr4 2778329 OsKitaake10g208000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23483872	A-T	Hetero	INTERGENIC
SBS	Chr1	30605716	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g303100
SBS	Chr2	31336888	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr2	35853832	G-A	Hetero	INTERGENIC
SBS	Chr3	23024211	A-G	Homo	INTERGENIC
SBS	Chr3	37243271	A-G	Homo	INTERGENIC
SBS	Chr4	1427067	G-A	Hetero	INTERGENIC
SBS	Chr4	2293326	G-A	Hetero	INTERGENIC
SBS	Chr4	2904598	G-A	Homo	INTERGENIC
SBS	Chr4	19340429	G-T	Hetero	INTERGENIC
SBS	Chr4	23185367	G-A	Homo	INTERGENIC
SBS	Chr4	23204246	A-G	Hetero	INTRON
SBS	Chr4	28749177	T-C	Homo	INTERGENIC
SBS	Chr4	34425830	T-C	Homo	INTERGENIC
SBS	Chr5	2807747	T-C	Hetero	INTRON
SBS	Chr5	4896034	A-C	Hetero	INTERGENIC
SBS	Chr5	14315955	T-C	Hetero	INTERGENIC
SBS	Chr5	21014505	C-T	Hetero	INTERGENIC
SBS	Chr7	4320492	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g054400
SBS	Chr7	16370554	G-T	Hetero	INTERGENIC
SBS	Chr7	18712723	C-T	Homo	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr9	21999846	T-A	Homo	INTERGENIC
SBS	Chr10	17447339	G-C	Hetero	INTERGENIC
SBS	Chr11	12537785	G-A	Homo	INTERGENIC
SBS	Chr11	25882628	A-G	Hetero	INTERGENIC
SBS	Chr12	4121366	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g056200
SBS	Chr12	12464590	G-T	Hetero	INTERGENIC
SBS	Chr12	15831259	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	22001	87000	64999	4
Deletion	Chr5	296908	296913	5
Deletion	Chr7	961038	961048	10
Deletion	Chr4	2700001	2724000	23999
Deletion	Chr11	2726751	2726752	1
Deletion	Chr4	2779001	2912000	132999
Deletion	Chr4	2835049	2835053	4
Deletion	Chr9	4219001	4233000	13999	OsKitaake09g023100
Deletion	Chr12	8582526	8582543	17
Deletion	Chr3	8746097	8746105	8
Deletion	Chr12	9081915	9081926	11
Deletion	Chr9	9412893	9412897	4
Deletion	Chr4	11721632	11721634	2
Deletion	Chr1	11735798	11735800	2
Deletion	Chr1	11932099	11932100	1
Deletion	Chr7	13805869	13805870	1
Deletion	Chr1	20957247	20957248	1	OsKitaake01g205100
Deletion	Chr12	23958505	23958507	2
Deletion	Chr1	28936001	28956000	19999	OsKitaake01g281000
Deletion	Chr4	29392852	29392855	3
Deletion	Chr3	33363072	33363076	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2948791	2952078
Inversion	Chr5	2948801	2952080
Inversion	Chr9	4194389	4219327
Inversion	Chr9	4194391	4233217
Inversion	Chr1	23347304	23772450	OsKitaake01g228000
Inversion	Chr1	23347313	23772467	OsKitaake01g228000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes