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Mutant Information

Mutant Name	FN4425-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4425-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8174712 G-A HET OsKitaake01g102000
SBS Chr1 19848318 G-A HOMO
SBS Chr2 9561747 C-T HOMO
SBS Chr2 11435583 C-T HET
SBS Chr3 6438250 T-A HET OsKitaake03g091400
SBS Chr3 6438251 C-A HET
SBS Chr4 8471204 G-T HOMO
SBS Chr4 35607731 T-G HOMO OsKitaake04g303900
SBS Chr6 2027577 C-T HOMO OsKitaake06g025400
SBS Chr6 3700690 A-C HOMO OsKitaake06g051200
SBS Chr6 10477380 G-T HET
SBS Chr6 11258466 C-T HET
SBS Chr6 24398422 G-A HOMO
SBS Chr7 9706158 G-A HET
SBS Chr7 11928390 A-C HOMO
SBS Chr8 2829348 C-T HET
SBS Chr8 10663843 A-T HOMO
SBS Chr8 16178793 G-C HET
SBS Chr9 4209802 G-A HOMO
SBS Chr9 17543902 G-T HET
SBS Chr11 4359291 G-A HET
SBS Chr11 13794421 G-A HET
SBS Chr11 15823214 A-G HET
SBS Chr12 12963876 C-G HET
SBS Chr12 14275918 A-T HET

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 951985 951985 1
Deletion Chr6 7791418 7791418 1
Deletion Chr8 8453248 8453248 1
Deletion Chr5 9592955 9592955 1
Deletion Chr8 11432001 11467000 35000 2
Deletion Chr12 11667308 11667462 155
Deletion Chr1 15592436 15592436 1
Deletion Chr1 19987001 20196000 209000 9
Deletion Chr7 23513802 23513808 7
Deletion Chr6 25289585 25289585 1
Deletion Chr6 27509722 27509725 4 OsKitaake06g248600
Deletion Chr4 30611001 30649000 38000 6
Deletion Chr1 44117008 44117013 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12594783 12594785 1
Insertion Chr7 19175780 19175782 1
Insertion Chr9 10516427 10516429 1
Insertion Chr2 18638224 18638226 1
Insertion Chr2 23874401 23874408 6
Insertion Chr10 13297893 13297896 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2746863 2752123
Inversion Chr3 2746905 2752156

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8174712	G-A	HET		OsKitaake01g102000
SBS	Chr1	19848318	G-A	HOMO
SBS	Chr2	9561747	C-T	HOMO
SBS	Chr2	11435583	C-T	HET
SBS	Chr3	6438250	T-A	HET		OsKitaake03g091400
SBS	Chr3	6438251	C-A	HET
SBS	Chr4	8471204	G-T	HOMO
SBS	Chr4	35607731	T-G	HOMO		OsKitaake04g303900
SBS	Chr6	2027577	C-T	HOMO		OsKitaake06g025400
SBS	Chr6	3700690	A-C	HOMO		OsKitaake06g051200
SBS	Chr6	10477380	G-T	HET
SBS	Chr6	11258466	C-T	HET
SBS	Chr6	24398422	G-A	HOMO
SBS	Chr7	9706158	G-A	HET
SBS	Chr7	11928390	A-C	HOMO
SBS	Chr8	2829348	C-T	HET
SBS	Chr8	10663843	A-T	HOMO
SBS	Chr8	16178793	G-C	HET
SBS	Chr9	4209802	G-A	HOMO
SBS	Chr9	17543902	G-T	HET
SBS	Chr11	4359291	G-A	HET
SBS	Chr11	13794421	G-A	HET
SBS	Chr11	15823214	A-G	HET
SBS	Chr12	12963876	C-G	HET
SBS	Chr12	14275918	A-T	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	951985	951985	1
Deletion	Chr6	7791418	7791418	1
Deletion	Chr8	8453248	8453248	1
Deletion	Chr5	9592955	9592955	1
Deletion	Chr8	11432001	11467000	35000	2
Deletion	Chr12	11667308	11667462	155
Deletion	Chr1	15592436	15592436	1
Deletion	Chr1	19987001	20196000	209000	9
Deletion	Chr7	23513802	23513808	7
Deletion	Chr6	25289585	25289585	1
Deletion	Chr6	27509722	27509725	4	OsKitaake06g248600
Deletion	Chr4	30611001	30649000	38000	6
Deletion	Chr1	44117008	44117013	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2746863	2752123
Inversion	Chr3	2746905	2752156

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes