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| Mutant Information |
|---|
| Mutant Name | FN443-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN443-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17393619 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17772446 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g180800 |
| SBS | Chr1 | 19481398 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41463162 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17102105 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18802437 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23891334 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17540897 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25236157 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 19859305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20286085 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21493968 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 26622186 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g191400 |
| SBS | Chr4 | 26625802 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 26625803 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g191500 |
| SBS | Chr5 | 2654606 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 14864461 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1509266 | C-T | Hetero | STOP_GAINED | OsKitaake06g017450 |
| SBS | Chr6 | 4326489 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8826345 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9649181 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15569459 | G-C | Homo | INTRON | |
| SBS | Chr8 | 23669938 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g182400 |
| SBS | Chr9 | 3039817 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6362548 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6870942 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13428774 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 14869909 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 375362 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g003600 |
| SBS | Chr11 | 16351972 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 24457970 | T-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 194304 | 194306 | 2 | |
| Deletion | Chr4 | 2368223 | 2368224 | 1 | OsKitaake04g014700 |
| Deletion | Chr8 | 4162197 | 4162204 | 7 | |
| Deletion | Chr7 | 7123297 | 7123309 | 12 | OsKitaake07g080800 |
| Deletion | Chr2 | 11658646 | 11658649 | 3 | |
| Deletion | Chr7 | 12864055 | 12864065 | 10 | |
| Deletion | Chr3 | 15423400 | 15423401 | 1 | |
| Deletion | Chr7 | 16876774 | 16876775 | 1 | |
| Deletion | Chr1 | 17386257 | 17386266 | 9 | |
| Deletion | Chr2 | 18772378 | 18772384 | 6 | |
| Deletion | Chr8 | 19368470 | 19368472 | 2 | |
| Deletion | Chr8 | 21657883 | 21657886 | 3 | |
| Deletion | Chr4 | 21741931 | 21741937 | 6 | OsKitaake04g124000 |
| Deletion | Chr10 | 21800568 | 21800570 | 2 | |
| Deletion | Chr1 | 39673311 | 39673313 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 3813176 | 3815135 | OsKitaake09g020301 |
| Inversion | Chr1 | 20445272 | 20446154 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 2533807 | Chr4 | 18388551 | |
| Translocation | Chr10 | 22187762 | Chr5 | 28552907 | 2 |
| Translocation | Chr10 | 22188831 | Chr5 | 28552903 | OsKitaake05g266800 |