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Mutant Information

Mutant Name	FN444-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN444-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4758094 C-A Hetero INTERGENIC
SBS Chr1 30133926 G-T Homo INTERGENIC
SBS Chr2 10860915 A-T Hetero INTRON
SBS Chr2 24905766 G-A Hetero INTERGENIC
SBS Chr3 37288601 C-G Hetero INTRON
SBS Chr4 6678062 C-T Hetero INTERGENIC
SBS Chr5 20454235 A-G Homo INTERGENIC
SBS Chr6 6036954 C-T Hetero INTERGENIC
SBS Chr6 16965949 T-A Hetero INTRON
SBS Chr7 10282611 A-G Homo INTERGENIC
SBS Chr7 14246194 A-T Hetero INTERGENIC
SBS Chr8 6157573 C-A Hetero INTERGENIC
SBS Chr8 26961894 C-A Homo INTERGENIC
SBS Chr10 5226328 A-C Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr11 28475026 C-G Homo NON_SYNONYMOUS_CODING OsKitaake11g232700
SBS Chr12 4612579 C-A Hetero INTERGENIC
SBS Chr12 22462474 C-T Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 373001 407000 33999 6
Deletion Chr11 795662 795663 1
Deletion Chr12 2595086 2595093 7
Deletion Chr12 6315645 6315646 1
Deletion Chr5 7560909 7560919 10
Deletion Chr2 12352427 12352431 4
Deletion Chr12 12357485 12357486 1
Deletion Chr6 18707872 18707874 2
Deletion Chr3 22420846 22420847 1
Deletion Chr6 24791556 24791557 1
Deletion Chr5 29782064 29782066 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367392 3
Insertion Chr6 409472 409475 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 323321 417228 OsKitaake12g005200
Inversion Chr12 372619 417222 OsKitaake12g005200
Inversion Chr5 17264835 17530146
Inversion Chr11 20980085 21695088 OsKitaake11g172100
Inversion Chr11 20980091 21695091 OsKitaake11g172100
Inversion Chr11 25694333 26009386 OsKitaake11g207700
Inversion Chr11 25694337 26009421 OsKitaake11g207700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4758094	C-A	Hetero	INTERGENIC
SBS	Chr1	30133926	G-T	Homo	INTERGENIC
SBS	Chr2	10860915	A-T	Hetero	INTRON
SBS	Chr2	24905766	G-A	Hetero	INTERGENIC
SBS	Chr3	37288601	C-G	Hetero	INTRON
SBS	Chr4	6678062	C-T	Hetero	INTERGENIC
SBS	Chr5	20454235	A-G	Homo	INTERGENIC
SBS	Chr6	6036954	C-T	Hetero	INTERGENIC
SBS	Chr6	16965949	T-A	Hetero	INTRON
SBS	Chr7	10282611	A-G	Homo	INTERGENIC
SBS	Chr7	14246194	A-T	Hetero	INTERGENIC
SBS	Chr8	6157573	C-A	Hetero	INTERGENIC
SBS	Chr8	26961894	C-A	Homo	INTERGENIC
SBS	Chr10	5226328	A-C	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr11	28475026	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g232700
SBS	Chr12	4612579	C-A	Hetero	INTERGENIC
SBS	Chr12	22462474	C-T	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	373001	407000	33999	6
Deletion	Chr11	795662	795663	1
Deletion	Chr12	2595086	2595093	7
Deletion	Chr12	6315645	6315646	1
Deletion	Chr5	7560909	7560919	10
Deletion	Chr2	12352427	12352431	4
Deletion	Chr12	12357485	12357486	1
Deletion	Chr6	18707872	18707874	2
Deletion	Chr3	22420846	22420847	1
Deletion	Chr6	24791556	24791557	1
Deletion	Chr5	29782064	29782066	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	323321	417228	OsKitaake12g005200
Inversion	Chr12	372619	417222	OsKitaake12g005200
Inversion	Chr5	17264835	17530146
Inversion	Chr11	20980085	21695088	OsKitaake11g172100
Inversion	Chr11	20980091	21695091	OsKitaake11g172100
Inversion	Chr11	25694333	26009386	OsKitaake11g207700
Inversion	Chr11	25694337	26009421	OsKitaake11g207700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes