Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4440-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4440-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3007590 | G-C | HOMO | ||
| SBS | Chr1 | 42835621 | C-T | HOMO | ||
| SBS | Chr2 | 8501460 | T-A | HOMO | ||
| SBS | Chr2 | 11809852 | G-A | HET | ||
| SBS | Chr2 | 14099903 | T-A | HET | ||
| SBS | Chr2 | 20849354 | C-T | HOMO | ||
| SBS | Chr2 | 26985611 | A-T | HET | ||
| SBS | Chr3 | 8022569 | G-A | HET | ||
| SBS | Chr3 | 12090788 | C-T | HET | ||
| SBS | Chr3 | 12732957 | G-T | HET | ||
| SBS | Chr4 | 18841450 | A-G | HET | ||
| SBS | Chr5 | 15542985 | G-A | HOMO | ||
| SBS | Chr5 | 21647754 | C-T | HOMO | ||
| SBS | Chr5 | 26565464 | T-C | HOMO | ||
| SBS | Chr5 | 27166233 | C-T | HOMO | ||
| SBS | Chr6 | 8811998 | T-G | HOMO | ||
| SBS | Chr6 | 29395981 | G-A | HOMO | ||
| SBS | Chr7 | 1328742 | A-T | HET | ||
| SBS | Chr7 | 7828394 | A-C | HOMO | ||
| SBS | Chr7 | 10958412 | G-C | HOMO | ||
| SBS | Chr8 | 1483381 | T-C | HET | ||
| SBS | Chr8 | 10131873 | C-T | HOMO | ||
| SBS | Chr8 | 19970892 | C-T | HET | ||
| SBS | Chr9 | 9297193 | G-C | HET | OsKitaake09g055500 | |
| SBS | Chr9 | 15125097 | G-A | HET | ||
| SBS | Chr9 | 17475016 | G-C | HET | ||
| SBS | Chr11 | 7249216 | G-A | HET | ||
| SBS | Chr11 | 10438465 | G-T | HET | ||
| SBS | Chr11 | 12541620 | A-G | HET | ||
| SBS | Chr11 | 18359819 | C-T | HET | ||
| SBS | Chr11 | 19207740 | G-T | HET | ||
| SBS | Chr11 | 20622534 | C-A | HET | ||
| SBS | Chr12 | 4753974 | A-G | HET | ||
| SBS | Chr12 | 5295229 | A-T | HET |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 67959 | 67980 | 22 | |
| Deletion | Chr12 | 5855256 | 5855268 | 13 | |
| Deletion | Chr11 | 6460529 | 6460529 | 1 | |
| Deletion | Chr3 | 7566407 | 7566408 | 2 | 2 |
| Deletion | Chr12 | 8662001 | 8718000 | 56000 | 3 |
| Deletion | Chr7 | 9924663 | 9924663 | 1 | |
| Deletion | Chr4 | 10272461 | 10272463 | 3 | |
| Deletion | Chr8 | 12823002 | 12823002 | 1 | |
| Deletion | Chr3 | 14965192 | 14965192 | 1 | |
| Deletion | Chr10 | 20138990 | 20138992 | 3 | |
| Deletion | Chr3 | 27951115 | 27951115 | 1 | |
| Deletion | Chr3 | 31299850 | 31299850 | 1 | OsKitaake03g329500 |
| Deletion | Chr1 | 39015793 | 39015795 | 3 |
Insertions: 10
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 3341891 | 3342101 | |
| Inversion | Chr2 | 8422446 | 8558190 | OsKitaake02g106800 |
| Inversion | Chr2 | 8422456 | 8558199 | OsKitaake02g106800 |
| Inversion | Chr11 | 9595474 | 9870990 | |
| Inversion | Chr11 | 9856939 | 9870982 | |
| Inversion | Chr1 | 25694012 | 25694323 |