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| Mutant Information |
|---|
| Mutant Name | FN4444-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4444-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 157614 | G-A | HET | ||
| SBS | Chr1 | 24639799 | T-C | HOMO | ||
| SBS | Chr3 | 4585523 | G-T | HET | ||
| SBS | Chr3 | 4989274 | A-G | HOMO | OsKitaake03g072000 | |
| SBS | Chr3 | 16667779 | G-C | HET | ||
| SBS | Chr3 | 16928847 | G-C | HET | ||
| SBS | Chr3 | 18514115 | T-A | HET | ||
| SBS | Chr3 | 20565993 | C-T | HET | ||
| SBS | Chr4 | 18640409 | G-A | HET | ||
| SBS | Chr4 | 21372498 | C-T | HOMO | ||
| SBS | Chr4 | 30387848 | A-T | HOMO | ||
| SBS | Chr5 | 2491930 | A-C | HOMO | ||
| SBS | Chr7 | 1692388 | G-A | HET | ||
| SBS | Chr7 | 7341166 | G-A | HOMO | ||
| SBS | Chr7 | 10405732 | G-T | HET | ||
| SBS | Chr8 | 12966841 | G-A | HET | ||
| SBS | Chr9 | 16383090 | G-A | HET | ||
| SBS | Chr9 | 16652554 | G-A | HET | ||
| SBS | Chr10 | 11696654 | C-A | HET | ||
| SBS | Chr10 | 16905203 | C-T | HOMO | ||
| SBS | Chr10 | 17329415 | G-A | HOMO | ||
| SBS | Chr10 | 22616359 | G-A | HOMO | ||
| SBS | Chr10 | 23858884 | A-T | HOMO | ||
| SBS | Chr11 | 7710987 | T-A | HOMO | ||
| SBS | Chr12 | 7791070 | C-G | HOMO | ||
| SBS | Chr12 | 14639729 | T-A | HOMO | ||
| SBS | Chr12 | 16864459 | C-G | HET |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 5124255 | 5124255 | 1 | |
| Deletion | Chr4 | 5996001 | 6051000 | 55000 | 3 |
| Deletion | Chr7 | 6502477 | 6502477 | 1 | |
| Deletion | Chr2 | 7203001 | 7227000 | 24000 | 5 |
| Deletion | Chr10 | 7505295 | 7505295 | 1 | |
| Deletion | Chr4 | 9475383 | 9475383 | 1 | |
| Deletion | Chr11 | 12681150 | 12681157 | 8 | |
| Deletion | Chr11 | 12970297 | 12970319 | 23 | |
| Deletion | Chr10 | 13068968 | 13068980 | 13 | |
| Deletion | Chr6 | 13997001 | 14021000 | 24000 | 3 |
| Deletion | Chr4 | 15249565 | 15249566 | 2 | |
| Deletion | Chr9 | 16007854 | 16007854 | 1 | |
| Deletion | Chr11 | 16374951 | 16374955 | 5 | |
| Deletion | Chr4 | 17164472 | 17164473 | 2 | |
| Deletion | Chr7 | 18317113 | 18317117 | 5 | |
| Deletion | Chr6 | 19915923 | 19915929 | 7 | |
| Deletion | Chr6 | 22249975 | 22249978 | 4 | |
| Deletion | Chr1 | 22652010 | 22652023 | 14 | |
| Deletion | Chr5 | 26417426 | 26417426 | 1 | |
| Deletion | Chr7 | 29075569 | 29075569 | 1 | OsKitaake07g277500 |
| Deletion | Chr3 | 30405536 | 30405536 | 1 | |
| Deletion | Chr4 | 31654355 | 31654357 | 3 | |
| Deletion | Chr1 | 39660494 | 39660494 | 1 |
Insertions: 6
Inversions: 11
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 974595 | 974804 | |
| Inversion | Chr11 | 4952638 | 5159448 | |
| Inversion | Chr11 | 4952644 | 5159448 | |
| Inversion | Chr5 | 5136981 | 5137172 | |
| Inversion | Chr11 | 5488754 | 5488940 | |
| Inversion | Chr11 | 12939758 | 12948001 | |
| Inversion | Chr11 | 12939759 | 12948008 | |
| Inversion | Chr5 | 14120177 | 14120380 | |
| Inversion | Chr9 | 22193415 | 22277812 | OsKitaake09g200200 |
| Inversion | Chr6 | 25140423 | 25140629 | |
| Inversion | Chr3 | 29022862 | 29023071 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1382121 | Chr4 | 2972197 | 2 |
| Translocation | Chr11 | 1382142 | Chr4 | 2971886 | 2 |
| Translocation | Chr11 | 23402522 | Chr9 | 4955801 | OsKitaake11g186660 |
| Translocation | Chr11 | 23402709 | Chr9 | 4955803 | OsKitaake11g186660 |