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| Mutant Information |
|---|
| Mutant Name | FN4446-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4446-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4087792 | G-A | HET | ||
| SBS | Chr1 | 7378518 | G-T | HOMO | ||
| SBS | Chr1 | 28594037 | C-T | HET | ||
| SBS | Chr2 | 25285673 | G-A | HOMO | ||
| SBS | Chr2 | 28803021 | G-A | HET | ||
| SBS | Chr3 | 7887235 | G-C | HET | ||
| SBS | Chr3 | 10817540 | C-G | HET | ||
| SBS | Chr3 | 14139331 | A-T | HET | ||
| SBS | Chr3 | 17243322 | T-A | HET | ||
| SBS | Chr3 | 37609836 | A-T | HET | ||
| SBS | Chr4 | 9659636 | G-C | HOMO | ||
| SBS | Chr4 | 16509922 | T-A | HET | ||
| SBS | Chr5 | 2658233 | G-C | HET | ||
| SBS | Chr5 | 10811856 | A-G | HOMO | ||
| SBS | Chr5 | 10811857 | G-A | HOMO | ||
| SBS | Chr5 | 10920713 | T-G | HOMO | ||
| SBS | Chr8 | 21966814 | G-T | HOMO | ||
| SBS | Chr8 | 21966815 | A-T | HOMO | ||
| SBS | Chr8 | 21966816 | A-T | HOMO | ||
| SBS | Chr9 | 12274236 | A-T | HET | ||
| SBS | Chr9 | 13067394 | T-C | HET | ||
| SBS | Chr10 | 229847 | C-A | HOMO | ||
| SBS | Chr10 | 10768796 | T-C | HET | ||
| SBS | Chr11 | 9908358 | G-T | HOMO | ||
| SBS | Chr11 | 25653265 | C-T | HET | ||
| SBS | Chr11 | 27542730 | G-A | HET | ||
| SBS | Chr12 | 3107809 | A-C | HOMO | ||
| SBS | Chr12 | 11423572 | C-T | HOMO |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 61734 | 62087 | 354 | |
| Deletion | Chr1 | 1339465 | 1339466 | 2 | |
| Deletion | Chr11 | 1842027 | 1842028 | 2 | |
| Deletion | Chr12 | 3061214 | 3061214 | 1 | |
| Deletion | Chr12 | 4900988 | 4900989 | 2 | OsKitaake12g063200 |
| Deletion | Chr4 | 5427001 | 5448000 | 21000 | OsKitaake04g026400 |
| Deletion | Chr4 | 6388410 | 6388415 | 6 | |
| Deletion | Chr11 | 7601705 | 7601705 | 1 | |
| Deletion | Chr4 | 10897590 | 10897596 | 7 | |
| Deletion | Chr1 | 17244980 | 17244980 | 1 | |
| Deletion | Chr6 | 19728305 | 19728309 | 5 | |
| Deletion | Chr7 | 20087366 | 20087380 | 15 | |
| Deletion | Chr4 | 22755493 | 22755503 | 11 | OsKitaake04g135900 |
| Deletion | Chr5 | 24260423 | 24260424 | 2 | OsKitaake05g216500 |
| Deletion | Chr8 | 25322665 | 25322676 | 12 | |
| Deletion | Chr3 | 28871719 | 28871722 | 4 | |
| Deletion | Chr1 | 32185623 | 32185623 | 1 |
Insertions: 8
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 7395742 | 8385705 | OsKitaake06g095800 |
| Inversion | Chr9 | 19515149 | 19639241 | OsKitaake09g159300 |
| Inversion | Chr9 | 19515178 | 19639254 | OsKitaake09g159300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 19916318 | Chr6 | 7395733 | 2 |
| Translocation | Chr9 | 19916759 | Chr6 | 8385702 | OsKitaake09g165800 |