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Mutant Information

Mutant Name	FN4449-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4449-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 858026 C-A HET
SBS Chr1 16024642 C-T HET
SBS Chr2 19460417 T-C HOMO
SBS Chr2 20622083 G-A HOMO
SBS Chr3 4592997 C-T HOMO
SBS Chr3 18645527 G-A HET
SBS Chr3 18645528 T-A HET
SBS Chr3 29216538 T-A HET OsKitaake03g303900
SBS Chr3 29216539 G-A HET
SBS Chr4 4133596 C-T HET
SBS Chr4 10944390 A-T HET
SBS Chr4 24980549 A-T HOMO
SBS Chr4 24980550 G-T HOMO
SBS Chr4 28107148 A-G HET
SBS Chr4 34175969 T-A HOMO
SBS Chr5 22298817 C-A HET
SBS Chr5 24099001 A-G HET
SBS Chr6 13197721 C-A HET
SBS Chr6 18692066 C-T HET
SBS Chr6 19309179 C-T HET
SBS Chr6 20392830 A-T HET
SBS Chr6 22821244 T-A HET
SBS Chr6 27212235 T-A HET
SBS Chr6 28956577 G-T HET
SBS Chr7 863892 C-T HET
SBS Chr7 20868140 C-T HOMO
SBS Chr8 10930496 T-G HOMO
SBS Chr8 20394933 C-T HET
SBS Chr9 12324861 C-T HET
SBS Chr9 12922264 C-T HET
SBS Chr9 14860801 G-T HET
SBS Chr9 22658376 G-A HET
SBS Chr11 13216201 G-A HET
SBS Chr11 14274202 G-T HET
SBS Chr11 17691555 G-C HOMO
SBS Chr12 21955976 G-A HET OsKitaake12g172200

Deletions: 40

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5229 5579 351
Deletion Chr6 15507 15507 1
Deletion Chr6 51630 51630 1
Deletion Chr3 1356463 1356463 1
Deletion Chr8 5621039 5621039 1
Deletion Chr11 5778058 5778058 1
Deletion Chr6 6313680 6313681 2
Deletion Chr12 6581853 6581863 11
Deletion Chr2 7328001 7374000 46000 5
Deletion Chr6 8131125 8131125 1
Deletion Chr6 8999701 8999701 1
Deletion Chr12 9199376 9199377 2
Deletion Chr2 9255964 9255987 24
Deletion Chr10 9424337 9424339 3
Deletion Chr12 9555396 9555396 1
Deletion Chr12 10592719 10592719 1
Deletion Chr4 10668932 10668932 1
Deletion Chr10 10724606 10724606 1
Deletion Chr12 11710682 11710682 1
Deletion Chr5 14289159 14289159 1
Deletion Chr3 14459269 14459270 2
Deletion Chr6 15252677 15252686 10
Deletion Chr10 15280919 15280919 1
Deletion Chr2 16808352 16808352 1
Deletion Chr12 19065990 19065995 6
Deletion Chr4 19348199 19348199 1
Deletion Chr8 20140622 20140622 1
Deletion Chr8 21373275 21373275 1
Deletion Chr2 22515554 22515554 1
Deletion Chr9 22645305 22645305 1
Deletion Chr2 23667500 23667500 1
Deletion Chr5 24165371 24165371 1
Deletion Chr4 24426945 24426945 1
Deletion Chr11 26079303 26079304 2
Deletion Chr5 27410530 27410530 1
Deletion Chr11 29117839 29117839 1
Deletion Chr1 30281358 30281360 3 OsKitaake01g298400
Deletion Chr2 31505389 31505389 1
Deletion Chr2 35390344 35390353 10
Deletion Chr1 37198643 37198643 1

Insertions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41982832 41982834 1 OsKitaake01g460300
Insertion Chr2 24925935 24925937 1
Insertion Chr2 29174615 29174617 1
Insertion Chr2 30668066 30668069 2
Insertion Chr3 697741 697745 3
Insertion Chr3 2457358 2457360 1
Insertion Chr4 10470470 10470472 1
Insertion Chr4 14826693 14826695 1
Insertion Chr4 21150146 21150148 1
Insertion Chr4 26521573 26521575 1
Insertion Chr5 11852160 11852162 1
Insertion Chr6 521143 521145 1
Insertion Chr6 5672711 5672713 1
Insertion Chr6 9694268 9694270 1
Insertion Chr6 17583740 17583742 1
Insertion Chr6 27088329 27088331 1
Insertion Chr7 3610931 3610933 1
Insertion Chr8 7708764 7708766 1
Insertion Chr8 8067714 8067716 1
Insertion Chr8 11576537 11576542 4
Insertion Chr8 19369989 19369991 1
Insertion Chr8 26175741 26175743 1
Insertion Chr8 27257524 27257527 2
Insertion Chr10 19834184 19834186 1
Insertion Chr4 34431166 34431168 1
Insertion Chr5 26583387 26583392 4 OsKitaake05g236550
Insertion Chr6 2147212 2147215 2
Insertion Chr6 3993090 3993092 1
Insertion Chr7 10622903 10622906 2
Insertion Chr10 7146 7148 1
Insertion Chr12 10596599 10596602 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3091534 3227053 OsKitaake11g044700
Inversion Chr11 3091540 3227053 OsKitaake11g044700
Inversion Chr2 4875976 4876048
Inversion Chr9 13223430 13223594
Inversion Chr7 23611227 23619187 OsKitaake07g207100
Inversion Chr7 24201086 24477243
Inversion Chr2 26203340 26203473

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 19360646 Chr7 23619173
Translocation Chr12 19360805 Chr7 23611201 OsKitaake07g207100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	858026	C-A	HET
SBS	Chr1	16024642	C-T	HET
SBS	Chr2	19460417	T-C	HOMO
SBS	Chr2	20622083	G-A	HOMO
SBS	Chr3	4592997	C-T	HOMO
SBS	Chr3	18645527	G-A	HET
SBS	Chr3	18645528	T-A	HET
SBS	Chr3	29216538	T-A	HET		OsKitaake03g303900
SBS	Chr3	29216539	G-A	HET
SBS	Chr4	4133596	C-T	HET
SBS	Chr4	10944390	A-T	HET
SBS	Chr4	24980549	A-T	HOMO
SBS	Chr4	24980550	G-T	HOMO
SBS	Chr4	28107148	A-G	HET
SBS	Chr4	34175969	T-A	HOMO
SBS	Chr5	22298817	C-A	HET
SBS	Chr5	24099001	A-G	HET
SBS	Chr6	13197721	C-A	HET
SBS	Chr6	18692066	C-T	HET
SBS	Chr6	19309179	C-T	HET
SBS	Chr6	20392830	A-T	HET
SBS	Chr6	22821244	T-A	HET
SBS	Chr6	27212235	T-A	HET
SBS	Chr6	28956577	G-T	HET
SBS	Chr7	863892	C-T	HET
SBS	Chr7	20868140	C-T	HOMO
SBS	Chr8	10930496	T-G	HOMO
SBS	Chr8	20394933	C-T	HET
SBS	Chr9	12324861	C-T	HET
SBS	Chr9	12922264	C-T	HET
SBS	Chr9	14860801	G-T	HET
SBS	Chr9	22658376	G-A	HET
SBS	Chr11	13216201	G-A	HET
SBS	Chr11	14274202	G-T	HET
SBS	Chr11	17691555	G-C	HOMO
SBS	Chr12	21955976	G-A	HET		OsKitaake12g172200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5229	5579	351
Deletion	Chr6	15507	15507	1
Deletion	Chr6	51630	51630	1
Deletion	Chr3	1356463	1356463	1
Deletion	Chr8	5621039	5621039	1
Deletion	Chr11	5778058	5778058	1
Deletion	Chr6	6313680	6313681	2
Deletion	Chr12	6581853	6581863	11
Deletion	Chr2	7328001	7374000	46000	5
Deletion	Chr6	8131125	8131125	1
Deletion	Chr6	8999701	8999701	1
Deletion	Chr12	9199376	9199377	2
Deletion	Chr2	9255964	9255987	24
Deletion	Chr10	9424337	9424339	3
Deletion	Chr12	9555396	9555396	1
Deletion	Chr12	10592719	10592719	1
Deletion	Chr4	10668932	10668932	1
Deletion	Chr10	10724606	10724606	1
Deletion	Chr12	11710682	11710682	1
Deletion	Chr5	14289159	14289159	1
Deletion	Chr3	14459269	14459270	2
Deletion	Chr6	15252677	15252686	10
Deletion	Chr10	15280919	15280919	1
Deletion	Chr2	16808352	16808352	1
Deletion	Chr12	19065990	19065995	6
Deletion	Chr4	19348199	19348199	1
Deletion	Chr8	20140622	20140622	1
Deletion	Chr8	21373275	21373275	1
Deletion	Chr2	22515554	22515554	1
Deletion	Chr9	22645305	22645305	1
Deletion	Chr2	23667500	23667500	1
Deletion	Chr5	24165371	24165371	1
Deletion	Chr4	24426945	24426945	1
Deletion	Chr11	26079303	26079304	2
Deletion	Chr5	27410530	27410530	1
Deletion	Chr11	29117839	29117839	1
Deletion	Chr1	30281358	30281360	3	OsKitaake01g298400
Deletion	Chr2	31505389	31505389	1
Deletion	Chr2	35390344	35390353	10
Deletion	Chr1	37198643	37198643	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3091534	3227053	OsKitaake11g044700
Inversion	Chr11	3091540	3227053	OsKitaake11g044700
Inversion	Chr2	4875976	4876048
Inversion	Chr9	13223430	13223594
Inversion	Chr7	23611227	23619187	OsKitaake07g207100
Inversion	Chr7	24201086	24477243
Inversion	Chr2	26203340	26203473

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes