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Mutant Information

Mutant Name	FN445-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN445-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3573947 A-C Homo INTERGENIC
SBS Chr1 18820255 G-A Hetero INTERGENIC
SBS Chr1 28411182 T-A Hetero INTERGENIC
SBS Chr1 28725667 A-G Hetero INTRON
SBS Chr1 28725671 C-G Hetero INTRON
SBS Chr1 32916173 G-A Hetero INTERGENIC
SBS Chr1 44021234 A-G Homo INTERGENIC
SBS Chr2 561459 G-A Hetero INTRON
SBS Chr2 3699175 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g053500
SBS Chr2 6966680 A-G Hetero INTERGENIC
SBS Chr2 15044577 T-A Hetero INTERGENIC
SBS Chr3 9621210 C-T Hetero INTRON
SBS Chr3 9914791 C-T Hetero INTRON
SBS Chr3 9914792 A-T Hetero INTRON
SBS Chr3 18861356 T-A Homo INTERGENIC
SBS Chr3 31161979 C-T Hetero INTERGENIC
SBS Chr3 32018808 A-G Hetero INTERGENIC
SBS Chr4 5962370 A-C Hetero INTERGENIC
SBS Chr4 36118485 G-T Hetero STOP_GAINED OsKitaake04g311200
SBS Chr5 16495990 G-T Hetero INTERGENIC
SBS Chr5 27501199 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 13389867 C-T Hetero INTERGENIC
SBS Chr6 18713230 G-A Hetero INTERGENIC
SBS Chr6 21922857 G-A Hetero SPLICE_SITE_DONOR OsKitaake06g192800
SBS Chr6 27880034 T-G Homo INTERGENIC
SBS Chr7 3594820 G-T Hetero INTERGENIC
SBS Chr7 11065943 G-A Hetero INTERGENIC
SBS Chr7 16987815 T-A Homo INTERGENIC
SBS Chr7 24582767 A-C Homo INTERGENIC
SBS Chr7 24582768 C-A Hetero INTERGENIC
SBS Chr8 1750448 A-C Homo INTERGENIC
SBS Chr8 11585764 C-T Hetero INTERGENIC
SBS Chr8 12458709 T-C Homo INTERGENIC
SBS Chr8 26085798 T-G Homo INTRON
SBS Chr9 11988773 C-T Homo INTERGENIC
SBS Chr10 6568484 C-G Hetero INTERGENIC
SBS Chr10 9100375 C-T Hetero INTERGENIC
SBS Chr10 10167515 G-C Hetero INTERGENIC
SBS Chr10 22493639 A-T Hetero UTR_3_PRIME
SBS Chr11 16206981 G-A Hetero INTERGENIC
SBS Chr11 27862503 C-T Hetero INTERGENIC
SBS Chr12 12103733 C-A Hetero INTERGENIC
SBS Chr12 16491344 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 239001 420000 180999 10
Deletion Chr3 3381769 3381770 1
Deletion Chr4 4560001 4573000 12999
Deletion Chr4 5823001 5875000 51999 6
Deletion Chr4 6892001 6903000 10999
Deletion Chr8 7537573 7537581 8
Deletion Chr11 7653840 7653842 2
Deletion Chr12 7842482 7842485 3
Deletion Chr3 14720951 14720962 11
Deletion Chr2 15116214 15116215 1 OsKitaake02g158400
Deletion Chr11 15725962 15725974 12
Deletion Chr11 19633017 19633018 1
Deletion Chr6 28070486 28070487 1
Deletion Chr5 30227817 30228169 352
Deletion Chr2 32898318 32898319 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43985976 43985979 2
Insertion Chr2 5042258 5042261 2
Insertion Chr2 34759188 34759191 2
Insertion Chr5 15149474 15149482 7
Insertion Chr5 16919938 16919943 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7672642 7673317
Inversion Chr12 7672649 7673771
Inversion Chr12 12436029 12883769
Inversion Chr12 12436316 12883787

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10078460 Chr4 6889901
Translocation Chr12 18426842 Chr10 10076580 OsKitaake12g134500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3573947	A-C	Homo	INTERGENIC
SBS	Chr1	18820255	G-A	Hetero	INTERGENIC
SBS	Chr1	28411182	T-A	Hetero	INTERGENIC
SBS	Chr1	28725667	A-G	Hetero	INTRON
SBS	Chr1	28725671	C-G	Hetero	INTRON
SBS	Chr1	32916173	G-A	Hetero	INTERGENIC
SBS	Chr1	44021234	A-G	Homo	INTERGENIC
SBS	Chr2	561459	G-A	Hetero	INTRON
SBS	Chr2	3699175	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g053500
SBS	Chr2	6966680	A-G	Hetero	INTERGENIC
SBS	Chr2	15044577	T-A	Hetero	INTERGENIC
SBS	Chr3	9621210	C-T	Hetero	INTRON
SBS	Chr3	9914791	C-T	Hetero	INTRON
SBS	Chr3	9914792	A-T	Hetero	INTRON
SBS	Chr3	18861356	T-A	Homo	INTERGENIC
SBS	Chr3	31161979	C-T	Hetero	INTERGENIC
SBS	Chr3	32018808	A-G	Hetero	INTERGENIC
SBS	Chr4	5962370	A-C	Hetero	INTERGENIC
SBS	Chr4	36118485	G-T	Hetero	STOP_GAINED	OsKitaake04g311200
SBS	Chr5	16495990	G-T	Hetero	INTERGENIC
SBS	Chr5	27501199	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	13389867	C-T	Hetero	INTERGENIC
SBS	Chr6	18713230	G-A	Hetero	INTERGENIC
SBS	Chr6	21922857	G-A	Hetero	SPLICE_SITE_DONOR	OsKitaake06g192800
SBS	Chr6	27880034	T-G	Homo	INTERGENIC
SBS	Chr7	3594820	G-T	Hetero	INTERGENIC
SBS	Chr7	11065943	G-A	Hetero	INTERGENIC
SBS	Chr7	16987815	T-A	Homo	INTERGENIC
SBS	Chr7	24582767	A-C	Homo	INTERGENIC
SBS	Chr7	24582768	C-A	Hetero	INTERGENIC
SBS	Chr8	1750448	A-C	Homo	INTERGENIC
SBS	Chr8	11585764	C-T	Hetero	INTERGENIC
SBS	Chr8	12458709	T-C	Homo	INTERGENIC
SBS	Chr8	26085798	T-G	Homo	INTRON
SBS	Chr9	11988773	C-T	Homo	INTERGENIC
SBS	Chr10	6568484	C-G	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Hetero	INTERGENIC
SBS	Chr10	10167515	G-C	Hetero	INTERGENIC
SBS	Chr10	22493639	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	16206981	G-A	Hetero	INTERGENIC
SBS	Chr11	27862503	C-T	Hetero	INTERGENIC
SBS	Chr12	12103733	C-A	Hetero	INTERGENIC
SBS	Chr12	16491344	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	239001	420000	180999	10
Deletion	Chr3	3381769	3381770	1
Deletion	Chr4	4560001	4573000	12999
Deletion	Chr4	5823001	5875000	51999	6
Deletion	Chr4	6892001	6903000	10999
Deletion	Chr8	7537573	7537581	8
Deletion	Chr11	7653840	7653842	2
Deletion	Chr12	7842482	7842485	3
Deletion	Chr3	14720951	14720962	11
Deletion	Chr2	15116214	15116215	1	OsKitaake02g158400
Deletion	Chr11	15725962	15725974	12
Deletion	Chr11	19633017	19633018	1
Deletion	Chr6	28070486	28070487	1
Deletion	Chr5	30227817	30228169	352
Deletion	Chr2	32898318	32898319	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7672642	7673317
Inversion	Chr12	7672649	7673771
Inversion	Chr12	12436029	12883769
Inversion	Chr12	12436316	12883787

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes