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Mutant Information |
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Mutant Name | FN4451-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4451-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 49
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 1440701 | A-G | HOMO | ||
SBS | Chr1 | 11285413 | T-G | HET | OsKitaake01g138366 | |
SBS | Chr1 | 14996761 | C-G | HET | ||
SBS | Chr1 | 26502894 | G-A | HOMO | ||
SBS | Chr1 | 31209720 | C-G | HET | ||
SBS | Chr2 | 5712233 | G-T | HOMO | ||
SBS | Chr2 | 6313639 | C-A | HET | ||
SBS | Chr2 | 6313640 | C-T | HET | ||
SBS | Chr2 | 18893537 | A-C | HET | ||
SBS | Chr2 | 18893538 | A-T | HET | ||
SBS | Chr2 | 20212673 | T-A | HET | ||
SBS | Chr2 | 27850675 | G-T | HET | OsKitaake02g280601 | |
SBS | Chr2 | 32486045 | G-T | HET | ||
SBS | Chr3 | 11497397 | G-A | HET | ||
SBS | Chr3 | 20207797 | C-T | HOMO | ||
SBS | Chr3 | 26571053 | G-T | HET | ||
SBS | Chr4 | 8925785 | C-T | HET | ||
SBS | Chr4 | 9258597 | A-T | HET | OsKitaake04g047700 | |
SBS | Chr4 | 27115100 | G-T | HET | OsKitaake04g197200 | |
SBS | Chr4 | 35230689 | C-T | HET | ||
SBS | Chr4 | 36881880 | C-T | HET | OsKitaake04g322400 | |
SBS | Chr5 | 9332540 | A-T | HET | ||
SBS | Chr5 | 16721864 | T-G | HET | ||
SBS | Chr5 | 20127735 | C-T | HET | ||
SBS | Chr5 | 26998787 | G-A | HET | ||
SBS | Chr5 | 28475039 | C-G | HET | ||
SBS | Chr6 | 6570797 | T-A | HOMO | ||
SBS | Chr6 | 7313744 | G-T | HET | ||
SBS | Chr6 | 11511966 | C-T | HET | ||
SBS | Chr6 | 17081845 | T-A | HET | ||
SBS | Chr6 | 18282612 | C-T | HET | ||
SBS | Chr6 | 28266341 | G-A | HET | ||
SBS | Chr8 | 11200583 | C-G | HET | ||
SBS | Chr8 | 14979848 | A-T | HET | ||
SBS | Chr8 | 15807551 | G-T | HET | ||
SBS | Chr8 | 17961441 | G-A | HET | OsKitaake08g133600 | |
SBS | Chr8 | 22364585 | C-A | HET | ||
SBS | Chr9 | 8487870 | T-C | HET | ||
SBS | Chr10 | 3311326 | C-G | HET | ||
SBS | Chr10 | 15543182 | T-A | HET | OsKitaake10g100500 | |
SBS | Chr10 | 17440794 | C-A | HET | OsKitaake10g118900 | |
SBS | Chr10 | 23063645 | C-T | HET | ||
SBS | Chr11 | 16070898 | C-T | HOMO | ||
SBS | Chr11 | 26309704 | C-T | HET | ||
SBS | Chr12 | 272797 | T-A | HOMO | ||
SBS | Chr12 | 631442 | G-T | HET | ||
SBS | Chr12 | 1480100 | G-T | HET | OsKitaake12g022200 | |
SBS | Chr12 | 14327783 | G-A | HET | ||
SBS | Chr12 | 18372469 | C-T | HOMO |
Deletions: 33
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr1 | 906814 | 906814 | 1 | |
Deletion | Chr1 | 1443917 | 1443927 | 11 | |
Deletion | Chr6 | 2421248 | 2421250 | 3 | |
Deletion | Chr7 | 4145540 | 4145540 | 1 | |
Deletion | Chr12 | 6610207 | 6610207 | 1 | |
Deletion | Chr10 | 7192955 | 7192956 | 2 | |
Deletion | Chr6 | 7584894 | 7584894 | 1 | |
Deletion | Chr10 | 8490717 | 8490717 | 1 | |
Deletion | Chr12 | 9634110 | 9634115 | 6 | |
Deletion | Chr1 | 10716522 | 10716798 | 277 | |
Deletion | Chr9 | 11140820 | 11140820 | 1 | |
Deletion | Chr8 | 11535671 | 11535683 | 13 | |
Deletion | Chr7 | 12542367 | 12542368 | 2 | |
Deletion | Chr11 | 12640907 | 12640908 | 2 | |
Deletion | Chr9 | 13348594 | 13348600 | 7 | |
Deletion | Chr4 | 13600958 | 13600958 | 1 | |
Deletion | Chr11 | 13846977 | 13846987 | 11 | |
Deletion | Chr10 | 14463001 | 14463001 | 1 | |
Deletion | Chr9 | 15355419 | 15355424 | 6 | |
Deletion | Chr12 | 15993716 | 15993716 | 1 | |
Deletion | Chr9 | 16635881 | 16635895 | 15 | |
Deletion | Chr2 | 16957130 | 16957137 | 8 | |
Deletion | Chr4 | 20667230 | 20667231 | 2 | |
Deletion | Chr10 | 22375901 | 22375901 | 1 | OsKitaake10g183600 |
Deletion | Chr7 | 22659003 | 22659005 | 3 | OsKitaake07g193600 |
Deletion | Chr7 | 24075895 | 24075903 | 9 | |
Deletion | Chr7 | 24136490 | 24136490 | 1 | |
Deletion | Chr3 | 25809820 | 25809834 | 15 | |
Deletion | Chr2 | 27481737 | 27481737 | 1 | |
Deletion | Chr3 | 27682669 | 27682669 | 1 | |
Deletion | Chr6 | 29798839 | 29798839 | 1 | |
Deletion | Chr3 | 36894755 | 36894755 | 1 | |
Deletion | Chr1 | 38859078 | 38859078 | 1 |
Insertions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr12 | 12246027 | 12246029 | 1 | |
Insertion | Chr1 | 34949517 | 34949519 | 1 | |
Insertion | Chr1 | 44159912 | 44159919 | 6 | OsKitaake01g493050 ![]() |
Insertion | Chr3 | 7904809 | 7904811 | 1 | |
Insertion | Chr6 | 25102201 | 25102203 | 1 | |
Insertion | Chr8 | 2324756 | 2324758 | 1 | |
Insertion | Chr8 | 3436675 | 3436678 | 2 | |
Insertion | Chr10 | 19824603 | 19824606 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr12 | 5142550 | 5390584 | |
Inversion | Chr12 | 5142556 | 5390596 | |
Inversion | Chr1 | 31571777 | 32072660 | OsKitaake01g317100 |
Inversion | Chr1 | 31571781 | 32072662 | OsKitaake01g317100 |
Inversion | Chr1 | 38773321 | 38773443 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr8 | 29260074 | Chr2 | 37155000 |