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| Mutant Information |
|---|
| Mutant Name | FN4452-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4452-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6098226 | C-T | HOMO | ||
| SBS | Chr1 | 9276999 | G-C | HET | ||
| SBS | Chr1 | 13325363 | G-A | HET | ||
| SBS | Chr1 | 16424603 | C-T | HET | ||
| SBS | Chr1 | 19260196 | G-T | HET | ||
| SBS | Chr1 | 21129728 | G-A | HET | ||
| SBS | Chr1 | 28516091 | G-A | HET | ||
| SBS | Chr2 | 3260883 | G-T | HET | OsKitaake02g047100 | |
| SBS | Chr2 | 12902692 | T-A | HOMO | ||
| SBS | Chr2 | 14102598 | G-T | HET | ||
| SBS | Chr2 | 14488648 | C-T | HOMO | ||
| SBS | Chr3 | 17447899 | T-A | HET | ||
| SBS | Chr3 | 18031454 | C-T | HET | ||
| SBS | Chr3 | 20025321 | A-G | HET | ||
| SBS | Chr4 | 4671765 | G-T | HET | ||
| SBS | Chr4 | 14707584 | T-C | HOMO | ||
| SBS | Chr4 | 15115912 | G-C | HOMO | ||
| SBS | Chr4 | 21712245 | T-A | HET | ||
| SBS | Chr4 | 29675149 | G-T | HET | OsKitaake04g228000 | |
| SBS | Chr5 | 17738118 | C-T | HOMO | ||
| SBS | Chr6 | 20882622 | A-G | HET | ||
| SBS | Chr7 | 2908410 | A-G | HET | ||
| SBS | Chr7 | 14820399 | C-A | HET | ||
| SBS | Chr7 | 18971521 | G-A | HET | ||
| SBS | Chr8 | 5846207 | T-G | HET | ||
| SBS | Chr8 | 8955571 | C-T | HET | ||
| SBS | Chr8 | 17452240 | C-G | HET | ||
| SBS | Chr8 | 17710298 | A-T | HET | ||
| SBS | Chr8 | 18296063 | G-A | HET | ||
| SBS | Chr9 | 4783705 | A-G | HOMO | ||
| SBS | Chr9 | 8635022 | G-C | HET | ||
| SBS | Chr9 | 10426341 | C-T | HET | ||
| SBS | Chr9 | 14576850 | A-T | HET | ||
| SBS | Chr9 | 22027846 | A-T | HOMO | ||
| SBS | Chr9 | 22027854 | G-T | HOMO | ||
| SBS | Chr9 | 22027855 | C-T | HOMO | ||
| SBS | Chr10 | 22028275 | G-T | HET | OsKitaake10g178400 | |
| SBS | Chr11 | 9631296 | G-A | HET | ||
| SBS | Chr11 | 18872989 | A-G | HET | ||
| SBS | Chr11 | 24682963 | C-T | HET | OsKitaake11g200100 | |
| SBS | Chr12 | 556020 | C-T | HET | ||
| SBS | Chr12 | 556022 | C-T | HET | ||
| SBS | Chr12 | 4618757 | C-T | HET | ||
| SBS | Chr12 | 8784739 | C-A | HET | ||
| SBS | Chr12 | 14124866 | C-T | HET | ||
| SBS | Chr12 | 14124867 | A-T | HET | ||
| SBS | Chr12 | 18596486 | G-A | HET |
Deletions: 19
Insertions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 33795577 | 33795579 | 1 | |
| Insertion | Chr2 | 11703342 | 11703344 | 1 | |
| Insertion | Chr4 | 1092467 | 1092469 | 1 | |
| Insertion | Chr5 | 26752290 | 26752292 | 1 | |
| Insertion | Chr7 | 28851768 | 28851770 | 1 | |
| Insertion | Chr12 | 1322937 | 1322939 | 1 | |
| Insertion | Chr3 | 26987802 | 26987805 | 2 | |
| Insertion | Chr6 | 781992 | 781994 | 1 | |
| Insertion | Chr7 | 5509853 | 5509855 | 1 | |
| Insertion | Chr8 | 6269067 | 6269069 | 1 | |
| Insertion | Chr8 | 9568270 | 9568272 | 1 | |
| Insertion | Chr8 | 20525886 | 20525888 | 1 | |
| Insertion | Chr9 | 20871256 | 20871258 | 1 | OsKitaake09g178300  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 1509573 | 1910646 | OsKitaake09g008900 |
| Inversion | Chr9 | 1509584 | 1910646 | OsKitaake09g008900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 1033192 | Chr2 | 24032739 | |
| Translocation | Chr12 | 1033443 | Chr2 | 24032739 |