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| Mutant Information |
|---|
| Mutant Name | FN4453-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4453-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27244349 | C-T | HOMO | ||
| SBS | Chr1 | 40867910 | C-T | HET | OsKitaake01g445200 | |
| SBS | Chr1 | 40867917 | C-T | HET | OsKitaake01g445200 | |
| SBS | Chr1 | 41619257 | C-A | HET | ||
| SBS | Chr2 | 7916674 | G-C | HET | ||
| SBS | Chr2 | 26062757 | C-T | HOMO | ||
| SBS | Chr2 | 26178400 | A-T | HET | ||
| SBS | Chr2 | 29948396 | G-A | HET | ||
| SBS | Chr3 | 8354982 | T-C | HET | ||
| SBS | Chr3 | 20060245 | C-A | HET | ||
| SBS | Chr3 | 20127556 | C-T | HET | ||
| SBS | Chr3 | 30350037 | T-C | HET | ||
| SBS | Chr4 | 3427893 | C-G | HOMO | ||
| SBS | Chr4 | 9518271 | A-G | HOMO | ||
| SBS | Chr4 | 21916114 | C-A | HOMO | ||
| SBS | Chr6 | 68885 | G-A | HET | ||
| SBS | Chr6 | 13271218 | A-G | HET | ||
| SBS | Chr6 | 24402342 | G-A | HOMO | ||
| SBS | Chr6 | 27314703 | A-C | HOMO | ||
| SBS | Chr7 | 11808763 | T-C | HET | ||
| SBS | Chr7 | 16312687 | G-A | HET | ||
| SBS | Chr7 | 20616108 | G-T | HET | ||
| SBS | Chr7 | 20616109 | C-T | HET | ||
| SBS | Chr8 | 16283837 | C-G | HOMO | ||
| SBS | Chr8 | 16327419 | A-G | HET | ||
| SBS | Chr9 | 2696550 | G-A | HET | ||
| SBS | Chr10 | 7626784 | C-T | HET | ||
| SBS | Chr10 | 8538229 | G-T | HET | ||
| SBS | Chr10 | 13604262 | C-A | HET | ||
| SBS | Chr10 | 13604268 | C-T | HET | ||
| SBS | Chr10 | 15454879 | C-T | HET | ||
| SBS | Chr12 | 3843135 | C-T | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2218414 | 2218414 | 1 | |
| Deletion | Chr10 | 4813001 | 4931000 | 118000 | 12 |
| Deletion | Chr8 | 4985540 | 4985542 | 3 | |
| Deletion | Chr5 | 5397204 | 5397207 | 4 | |
| Deletion | Chr4 | 9382436 | 9382452 | 17 | |
| Deletion | Chr8 | 11424001 | 11467000 | 43000 | 2 |
| Deletion | Chr10 | 11577001 | 11617000 | 40000 | 3 |
| Deletion | Chr10 | 13144377 | 13144377 | 1 | |
| Deletion | Chr3 | 14296880 | 14296882 | 3 | |
| Deletion | Chr3 | 19272001 | 19339000 | 67000 | |
| Deletion | Chr4 | 21997105 | 21997105 | 1 | |
| Deletion | Chr6 | 22944001 | 22972000 | 28000 | 2 |
| Deletion | Chr8 | 23001866 | 23001866 | 1 | |
| Deletion | Chr7 | 23396016 | 23396016 | 1 | |
| Deletion | Chr3 | 27138887 | 27138887 | 1 | |
| Deletion | Chr1 | 29447850 | 29447892 | 43 | OsKitaake01g288100 |
| Deletion | Chr1 | 29447851 | 29447893 | 43 | OsKitaake01g288100 |
| Deletion | Chr2 | 31196016 | 31196016 | 1 |
Insertions: 9
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 2754445 | Chr3 | 12878908 | |
| Translocation | Chr4 | 2754454 | Chr3 | 12878911 |