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| Mutant Information |
|---|
| Mutant Name | FN4454-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4454-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4041054 | G-C | HET | ||
| SBS | Chr1 | 7091518 | A-G | HOMO | ||
| SBS | Chr1 | 30241845 | C-A | HET | ||
| SBS | Chr1 | 37648907 | T-A | HOMO | ||
| SBS | Chr1 | 37817559 | G-A | HOMO | OsKitaake01g403800 | |
| SBS | Chr2 | 2448594 | C-G | HET | OsKitaake02g035500 | |
| SBS | Chr2 | 32123903 | G-A | HET | OsKitaake02g328100 | |
| SBS | Chr3 | 29417601 | C-T | HET | ||
| SBS | Chr4 | 7480712 | G-T | HET | ||
| SBS | Chr4 | 34502556 | G-A | HET | ||
| SBS | Chr4 | 34896447 | C-T | HET | OsKitaake04g291800 | |
| SBS | Chr5 | 5823645 | G-T | HOMO | ||
| SBS | Chr5 | 9047058 | T-G | HOMO | ||
| SBS | Chr5 | 10978482 | A-T | HET | ||
| SBS | Chr5 | 12263046 | A-T | HOMO | ||
| SBS | Chr5 | 23067523 | A-T | HOMO | ||
| SBS | Chr5 | 24489023 | A-T | HOMO | ||
| SBS | Chr6 | 17176942 | T-A | HET | ||
| SBS | Chr6 | 18149740 | T-C | HET | ||
| SBS | Chr7 | 6950749 | G-T | HOMO | ||
| SBS | Chr7 | 12757595 | T-C | HOMO | ||
| SBS | Chr8 | 6674127 | C-A | HOMO | ||
| SBS | Chr8 | 20626083 | A-G | HET | ||
| SBS | Chr8 | 21705045 | C-T | HOMO | ||
| SBS | Chr9 | 3921090 | C-T | HET | ||
| SBS | Chr9 | 16994797 | A-C | HET | ||
| SBS | Chr10 | 2886078 | G-A | HET | ||
| SBS | Chr10 | 11091578 | G-A | HET | ||
| SBS | Chr11 | 15427514 | T-A | HOMO | ||
| SBS | Chr11 | 17138850 | T-A | HET | ||
| SBS | Chr12 | 13641527 | C-A | HOMO | ||
| SBS | Chr12 | 15569794 | T-A | HET |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 6167510 | 6167510 | 1 | |
| Deletion | Chr1 | 12574872 | 12574873 | 2 | |
| Deletion | Chr5 | 13641951 | 13641955 | 5 | |
| Deletion | Chr12 | 14166843 | 14166850 | 8 | |
| Deletion | Chr12 | 14171027 | 14171043 | 17 | |
| Deletion | Chr5 | 14945404 | 14945405 | 2 | |
| Deletion | Chr3 | 16801126 | 16801126 | 1 | |
| Deletion | Chr4 | 17882001 | 18088000 | 206000 | 11 |
| Deletion | Chr12 | 19590384 | 19590384 | 1 | |
| Deletion | Chr11 | 22582306 | 22582317 | 12 | OsKitaake11g179200 |
| Deletion | Chr11 | 22940279 | 22940280 | 2 | |
| Deletion | Chr6 | 23000146 | 23000146 | 1 | |
| Deletion | Chr5 | 28569489 | 28569489 | 1 | |
| Deletion | Chr4 | 33660321 | 33660322 | 2 | |
| Deletion | Chr1 | 39722431 | 39722433 | 3 |
Insertions: 12
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 3090225 | 3090597 | |
| Inversion | Chr11 | 8689946 | 8690047 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 17326308 | Chr1 | 30646299 | OsKitaake01g303600 |
| Translocation | Chr4 | 17326924 | Chr1 | 30646305 | OsKitaake01g303600 |