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Mutant Information |
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Mutant Name | FN4458-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4458-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 51
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 7214841 | T-A | HOMO | ||
SBS | Chr1 | 7214842 | C-A | HOMO | ||
SBS | Chr1 | 25836901 | C-T | HET | ||
SBS | Chr1 | 34504216 | C-T | HET | ||
SBS | Chr2 | 2415455 | G-T | HOMO | ||
SBS | Chr2 | 6269857 | A-G | HET | ||
SBS | Chr2 | 6269858 | T-C | HET | ||
SBS | Chr2 | 9882123 | G-A | HET | ||
SBS | Chr2 | 32087916 | C-G | HET | OsKitaake02g327900 | |
SBS | Chr2 | 33785535 | C-G | HET | ||
SBS | Chr3 | 6690449 | A-G | HOMO | ||
SBS | Chr3 | 15903344 | A-T | HOMO | ||
SBS | Chr3 | 15903345 | G-T | HOMO | ||
SBS | Chr3 | 26799537 | C-T | HET | ||
SBS | Chr4 | 16234559 | A-G | HOMO | ||
SBS | Chr4 | 17638593 | G-A | HOMO | ||
SBS | Chr4 | 17858727 | C-T | HOMO | ||
SBS | Chr4 | 22673232 | C-A | HET | ||
SBS | Chr4 | 28180839 | A-T | HOMO | ||
SBS | Chr4 | 36686399 | G-A | HOMO | OsKitaake04g319300 | |
SBS | Chr4 | 36686402 | C-A | HOMO | OsKitaake04g319300 | |
SBS | Chr4 | 36841285 | C-T | HET | ||
SBS | Chr5 | 508730 | C-T | HOMO | ||
SBS | Chr5 | 1762838 | C-A | HET | ||
SBS | Chr5 | 10338515 | A-G | HET | ||
SBS | Chr5 | 12404928 | T-C | HET | ||
SBS | Chr5 | 12907254 | G-C | HET | ||
SBS | Chr5 | 20494335 | G-A | HET | ||
SBS | Chr5 | 20494338 | A-G | HET | ||
SBS | Chr6 | 19432276 | C-T | HET | ||
SBS | Chr6 | 21325426 | A-G | HOMO | ||
SBS | Chr6 | 22632692 | C-T | HET | ||
SBS | Chr6 | 25859450 | C-A | HET | ||
SBS | Chr7 | 5433664 | C-T | HET | OsKitaake07g066200 | |
SBS | Chr7 | 10521964 | A-C | HET | ||
SBS | Chr7 | 11670892 | T-C | HET | ||
SBS | Chr7 | 29209550 | A-T | HET | OsKitaake07g280100 | |
SBS | Chr8 | 5242156 | A-T | HET | ||
SBS | Chr8 | 19090782 | C-T | HET | ||
SBS | Chr8 | 19766526 | G-A | HET | ||
SBS | Chr8 | 23378400 | G-A | HET | ||
SBS | Chr8 | 26269941 | G-A | HET | ||
SBS | Chr8 | 28856688 | G-A | HOMO | ||
SBS | Chr8 | 28856692 | C-A | HOMO | ||
SBS | Chr9 | 467411 | C-T | HET | ||
SBS | Chr9 | 4033228 | C-A | HET | ||
SBS | Chr10 | 14764930 | C-T | HET | ||
SBS | Chr11 | 14695540 | T-C | HOMO | ||
SBS | Chr11 | 23734047 | G-T | HOMO | ||
SBS | Chr12 | 8460881 | G-A | HET | ||
SBS | Chr12 | 14197757 | A-G | HET |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 1607974 | 1607974 | 1 | |
Deletion | Chr11 | 3072063 | 3072063 | 1 | |
Deletion | Chr1 | 8636859 | 8636862 | 4 | |
Deletion | Chr10 | 10886500 | 10886500 | 1 | |
Deletion | Chr8 | 11421001 | 11467000 | 46000 | 2 |
Deletion | Chr12 | 14197642 | 14197642 | 1 | |
Deletion | Chr4 | 15365729 | 15365729 | 1 | |
Deletion | Chr9 | 15748662 | 15748729 | 68 | |
Deletion | Chr3 | 15896428 | 15896433 | 6 | |
Deletion | Chr2 | 16056824 | 16056837 | 14 | |
Deletion | Chr2 | 16293001 | 16582000 | 289000 | 18 |
Deletion | Chr2 | 18859831 | 18859831 | 1 | |
Deletion | Chr12 | 19091487 | 19091488 | 2 | |
Deletion | Chr3 | 23160721 | 23160721 | 1 | |
Deletion | Chr1 | 25512206 | 25512206 | 1 | OsKitaake01g247533 |
Deletion | Chr5 | 26421694 | 26421698 | 5 | OsKitaake05g233900 |
Deletion | Chr7 | 29004243 | 29004243 | 1 | |
Deletion | Chr8 | 29252725 | 29252731 | 7 | OsKitaake08g254900 |
Deletion | Chr4 | 31970543 | 31970544 | 2 | |
Deletion | Chr1 | 32704906 | 32704906 | 1 | |
Deletion | Chr1 | 40707194 | 40707241 | 48 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr4 | 36157070 | 36157072 | 1 | |
Insertion | Chr7 | 12758110 | 12758113 | 2 | |
Insertion | Chr7 | 21553253 | 21553256 | 2 | |
Insertion | Chr8 | 8802213 | 8802216 | 2 | OsKitaake08g080800 ![]() |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr3 | 13153077 | 13166556 | |
Inversion | Chr3 | 13153080 | 13166563 | |
Inversion | Chr1 | 15059822 | 15059941 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr5 | 20252534 | Chr1 | 36469017 | OsKitaake01g387500 |
Translocation | Chr5 | 20253203 | Chr1 | 36469018 | OsKitaake01g387500 |