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| Mutant Information |
|---|
| Mutant Name | FN446-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN446-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5218708 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 13375793 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 38635060 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8185202 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27806501 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30263755 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g317400 |
| SBS | Chr4 | 15882940 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16641671 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 8013282 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9183444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15353425 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 26424666 | C-G | Homo | INTRON | |
| SBS | Chr6 | 28012337 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8450838 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9861951 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 10920096 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g103700 |
| SBS | Chr7 | 11702486 | G-T | Hetero | INTRON | |
| SBS | Chr7 | 25273676 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25273677 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26378162 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16536013 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 1821926 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10914399 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3072382 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 22808093 | A-T | Homo | INTRON |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1708784 | 1708790 | 6 | |
| Deletion | Chr11 | 3692526 | 3692533 | 7 | |
| Deletion | Chr5 | 4146054 | 4146056 | 2 | |
| Deletion | Chr1 | 5534001 | 5570000 | 35999 | 3 |
| Deletion | Chr7 | 7146933 | 7146937 | 4 | |
| Deletion | Chr7 | 8614417 | 8614418 | 1 | |
| Deletion | Chr10 | 8654782 | 8654829 | 47 | OsKitaake10g053166 |
| Deletion | Chr4 | 9480408 | 9480580 | 172 | |
| Deletion | Chr9 | 11462395 | 11462398 | 3 | |
| Deletion | Chr3 | 13728461 | 13728462 | 1 | |
| Deletion | Chr6 | 19474958 | 19474964 | 6 | |
| Deletion | Chr5 | 22189539 | 22189540 | 1 | |
| Deletion | Chr4 | 28012755 | 28012759 | 4 | |
| Deletion | Chr6 | 28746659 | 28746660 | 1 | |
| Deletion | Chr4 | 30238283 | 30238284 | 1 | |
| Deletion | Chr1 | 42744557 | 42744562 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 28456327 | 28456330 | 2 | |
| Insertion | Chr3 | 25547616 | 25547618 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 15036239 | 15038575 | OsKitaake09g104000 |
| Inversion | Chr9 | 15036243 | 15038577 | OsKitaake09g104000 |