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| Mutant Information |
|---|
| Mutant Name | FN4464-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4464-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 52
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2734930 | A-G | HET | ||
| SBS | Chr1 | 9376193 | A-T | HET | OsKitaake01g120200 | |
| SBS | Chr1 | 16205768 | T-C | HET | ||
| SBS | Chr1 | 29641401 | A-T | HOMO | ||
| SBS | Chr1 | 36100183 | T-C | HET | ||
| SBS | Chr1 | 40797685 | C-T | HET | ||
| SBS | Chr2 | 6637775 | C-A | HET | ||
| SBS | Chr2 | 9409989 | C-T | HET | ||
| SBS | Chr2 | 12464043 | T-G | HOMO | ||
| SBS | Chr2 | 17823051 | C-T | HET | ||
| SBS | Chr2 | 32005816 | C-G | HET | ||
| SBS | Chr2 | 32237133 | A-G | HET | ||
| SBS | Chr3 | 3019561 | A-C | HET | ||
| SBS | Chr3 | 4872121 | C-T | HET | ||
| SBS | Chr3 | 9972395 | T-A | HET | ||
| SBS | Chr3 | 13089371 | C-T | HET | ||
| SBS | Chr3 | 14806992 | G-T | HOMO | ||
| SBS | Chr3 | 30628904 | C-A | HET | ||
| SBS | Chr4 | 10887083 | C-A | HET | ||
| SBS | Chr4 | 18993291 | G-T | HET | ||
| SBS | Chr4 | 20735911 | T-C | HET | ||
| SBS | Chr4 | 31694347 | C-G | HET | ||
| SBS | Chr5 | 8373165 | G-A | HET | ||
| SBS | Chr5 | 11830324 | A-C | HET | ||
| SBS | Chr5 | 27013639 | C-A | HET | ||
| SBS | Chr6 | 6341927 | G-A | HOMO | ||
| SBS | Chr6 | 8835370 | T-C | HET | ||
| SBS | Chr6 | 9026333 | A-T | HET | ||
| SBS | Chr6 | 9268832 | G-A | HET | ||
| SBS | Chr6 | 9268861 | G-A | HET | ||
| SBS | Chr6 | 9268864 | G-A | HET | ||
| SBS | Chr6 | 12571044 | G-T | HOMO | OsKitaake06g134200 | |
| SBS | Chr6 | 19581518 | G-T | HET | ||
| SBS | Chr6 | 28011900 | A-G | HET | ||
| SBS | Chr7 | 15515440 | G-A | HET | ||
| SBS | Chr7 | 18864556 | A-T | HOMO | ||
| SBS | Chr8 | 2166918 | A-C | HET | ||
| SBS | Chr8 | 5864355 | T-A | HET | ||
| SBS | Chr8 | 6161868 | C-T | HET | ||
| SBS | Chr9 | 656530 | C-T | HOMO | ||
| SBS | Chr9 | 7469962 | T-G | HET | ||
| SBS | Chr9 | 16595471 | C-T | HET | ||
| SBS | Chr11 | 2104151 | G-A | HET | ||
| SBS | Chr11 | 15824405 | T-C | HET | ||
| SBS | Chr11 | 15824409 | G-A | HET | ||
| SBS | Chr11 | 22480285 | T-C | HET | ||
| SBS | Chr11 | 26798107 | C-T | HET | ||
| SBS | Chr11 | 26798108 | G-A | HET | ||
| SBS | Chr12 | 7741665 | A-T | HET | ||
| SBS | Chr12 | 10683085 | T-A | HOMO | ||
| SBS | Chr12 | 12837759 | T-C | HOMO | ||
| SBS | Chr12 | 13978136 | T-G | HOMO |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 8081138 | 8081139 | 2 | |
| Deletion | Chr11 | 10037385 | 10037385 | 1 | OsKitaake11g101950 |
| Deletion | Chr1 | 10152397 | 10152397 | 1 | |
| Deletion | Chr1 | 10948607 | 10948610 | 4 | |
| Deletion | Chr12 | 11583770 | 11583779 | 10 | |
| Deletion | Chr3 | 13053394 | 13053395 | 2 | |
| Deletion | Chr4 | 14403085 | 14403089 | 5 | |
| Deletion | Chr12 | 18228058 | 18228058 | 1 | |
| Deletion | Chr1 | 23882509 | 23882509 | 1 | |
| Deletion | Chr4 | 31167936 | 31167937 | 2 |
Insertions: 6
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 16972278 | 17057979 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 5950085 | Chr3 | 33573634 | |
| Translocation | Chr9 | 5950096 | Chr3 | 33573073 | |
| Translocation | Chr12 | 10687130 | Chr10 | 16295179 | |
| Translocation | Chr12 | 10687192 | Chr1 | 15034536 | |
| Translocation | Chr12 | 10688382 | Chr10 | 16295178 | |
| Translocation | Chr12 | 10688386 | Chr10 | 16295694 | OsKitaake10g109700 |
| Translocation | Chr10 | 16294694 | Chr1 | 15034533 | |
| Translocation | Chr4 | 20140467 | Chr3 | 33572638 | |
| Translocation | Chr6 | 25566450 | Chr3 | 33555061 |