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| Mutant Information |
|---|
| Mutant Name | FN4468-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4468-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13224084 | C-G | HOMO | ||
| SBS | Chr1 | 24263086 | T-C | HET | ||
| SBS | Chr1 | 29607863 | A-T | HET | ||
| SBS | Chr2 | 6527090 | C-T | HET | ||
| SBS | Chr2 | 14110126 | G-A | HOMO | ||
| SBS | Chr2 | 16799017 | C-T | HOMO | ||
| SBS | Chr2 | 27374502 | C-T | HET | ||
| SBS | Chr2 | 28467546 | C-G | HET | ||
| SBS | Chr3 | 14929361 | C-T | HET | ||
| SBS | Chr3 | 34112401 | C-T | HET | ||
| SBS | Chr4 | 6083158 | C-G | HET | ||
| SBS | Chr4 | 11381177 | C-T | HET | ||
| SBS | Chr4 | 15533919 | C-T | HOMO | ||
| SBS | Chr4 | 25190914 | G-A | HOMO | ||
| SBS | Chr5 | 8643307 | T-C | HET | ||
| SBS | Chr5 | 21105917 | A-G | HET | ||
| SBS | Chr6 | 6158106 | A-C | HOMO | ||
| SBS | Chr6 | 15340025 | T-C | HET | ||
| SBS | Chr7 | 7788816 | C-T | HET | ||
| SBS | Chr7 | 13806761 | C-T | HET | ||
| SBS | Chr7 | 22819140 | C-T | HET | ||
| SBS | Chr7 | 26136818 | G-T | HET | ||
| SBS | Chr8 | 3310487 | T-A | HOMO | ||
| SBS | Chr8 | 8273452 | C-T | HET | ||
| SBS | Chr8 | 15357001 | G-A | HET | ||
| SBS | Chr9 | 3484911 | A-T | HOMO | ||
| SBS | Chr9 | 13352020 | C-T | HET | ||
| SBS | Chr10 | 1841180 | T-G | HET | ||
| SBS | Chr10 | 8846621 | T-C | HET | ||
| SBS | Chr10 | 15348010 | C-A | HOMO | ||
| SBS | Chr10 | 17745180 | T-C | HET | ||
| SBS | Chr10 | 18864014 | A-C | HOMO | ||
| SBS | Chr10 | 19260320 | T-G | HOMO | ||
| SBS | Chr10 | 21042696 | G-T | HOMO | ||
| SBS | Chr10 | 21042697 | G-T | HOMO | ||
| SBS | Chr11 | 1517100 | T-C | HET | ||
| SBS | Chr11 | 3832067 | A-G | HET | ||
| SBS | Chr11 | 18249182 | A-G | HET | ||
| SBS | Chr12 | 14746712 | C-A | HET | ||
| SBS | Chr12 | 17798728 | G-A | HOMO |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1387477 | 1387477 | 1 | |
| Deletion | Chr1 | 2412216 | 2412227 | 12 | |
| Deletion | Chr8 | 2542779 | 2542780 | 2 | |
| Deletion | Chr7 | 4422557 | 4422557 | 1 | |
| Deletion | Chr2 | 5779152 | 5779157 | 6 | |
| Deletion | Chr8 | 7666579 | 7666579 | 1 | |
| Deletion | Chr10 | 13751630 | 13751631 | 2 | |
| Deletion | Chr2 | 14909101 | 14909101 | 1 | |
| Deletion | Chr10 | 15204001 | 15561000 | 357000 | 37 |
| Deletion | Chr7 | 16062405 | 16062405 | 1 | |
| Deletion | Chr5 | 17947913 | 17947914 | 2 | |
| Deletion | Chr8 | 19698297 | 19698301 | 5 | |
| Deletion | Chr1 | 19777028 | 19777028 | 1 | |
| Deletion | Chr4 | 21366241 | 21366244 | 4 | |
| Deletion | Chr5 | 21573066 | 21573073 | 8 | |
| Deletion | Chr10 | 21829702 | 21829702 | 1 | OsKitaake10g176000 |
| Deletion | Chr8 | 25114477 | 25114477 | 1 | |
| Deletion | Chr4 | 35999899 | 35999900 | 2 |
Insertions: 6
Inversions: 7
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9939707 | Chr3 | 6305292 | |
| Translocation | Chr10 | 9940241 | Chr3 | 6305318 | |
| Translocation | Chr10 | 15126565 | Chr9 | 22109460 | OsKitaake09g198900 |
| Translocation | Chr10 | 15129629 | Chr9 | 22109457 | OsKitaake09g198900 |
| Translocation | Chr3 | 24482509 | Chr1 | 36609443 | OsKitaake01g388900 |
| Translocation | Chr3 | 24483111 | Chr1 | 36609443 | OsKitaake01g388900 |
| Translocation | Chr7 | 25595746 | Chr5 | 22711300 | OsKitaake07g232600 |