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Mutant Information

Mutant Name	FN4469-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4469-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16107479 A-G HET
SBS Chr1 36821043 G-A HET
SBS Chr2 9106540 C-T HET
SBS Chr2 9106541 A-T HET
SBS Chr2 18947332 C-T HET
SBS Chr3 20634218 T-C HET
SBS Chr3 20899770 A-G HET
SBS Chr3 21505419 T-A HET
SBS Chr3 30646833 A-T HET
SBS Chr4 3115791 G-A HET
SBS Chr6 22871207 T-A HOMO
SBS Chr6 23717265 C-T HOMO
SBS Chr7 14175927 C-G HET
SBS Chr7 15737954 T-A HET
SBS Chr8 9771567 A-G HOMO
SBS Chr9 14052310 G-A HET
SBS Chr10 9100375 C-T HOMO
SBS Chr10 17046381 T-A HOMO
SBS Chr11 1572293 T-G HET
SBS Chr11 3021973 G-A HET
SBS Chr11 3021975 G-T HET
SBS Chr11 22553862 C-T HOMO
SBS Chr12 6894980 C-A HET

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4646264 4646478 215
Deletion Chr1 7042746 7042748 3
Deletion Chr6 9531843 9531845 3
Deletion Chr6 9532266 9532266 1
Deletion Chr4 11938048 11938055 8
Deletion Chr3 15794115 15794123 9 OsKitaake03g202300
Deletion Chr6 16683988 16683988 1
Deletion Chr5 20931399 20931399 1
Deletion Chr3 24553001 24594000 41000 3

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15539421 15539423 1
Insertion Chr4 30060675 30060677 1
Insertion Chr5 1366587 1366589 1
Insertion Chr5 18353393 18353395 1
Insertion Chr6 17554629 17554631 1
Insertion Chr7 12898704 12898706 1
Insertion Chr8 13999299 13999302 2
Insertion Chr12 2583597 2583599 1
Insertion Chr1 38251444 38251446 1
Insertion Chr9 9467437 9467439 1
Insertion Chr11 833380 833382 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 4892099 4892356
Inversion Chr5 11953625 12022691
Inversion Chr3 25132956 25133096
Inversion Chr3 32429839 32454190 OsKitaake03g343350
Inversion Chr4 35628280 35628499

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11676463 Chr2 13104059
Translocation Chr7 11677539 Chr2 13104048
Translocation Chr9 16271032 Chr1 1433791
Translocation Chr9 16327458 Chr1 1433788

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16107479	A-G	HET
SBS	Chr1	36821043	G-A	HET
SBS	Chr2	9106540	C-T	HET
SBS	Chr2	9106541	A-T	HET
SBS	Chr2	18947332	C-T	HET
SBS	Chr3	20634218	T-C	HET
SBS	Chr3	20899770	A-G	HET
SBS	Chr3	21505419	T-A	HET
SBS	Chr3	30646833	A-T	HET
SBS	Chr4	3115791	G-A	HET
SBS	Chr6	22871207	T-A	HOMO
SBS	Chr6	23717265	C-T	HOMO
SBS	Chr7	14175927	C-G	HET
SBS	Chr7	15737954	T-A	HET
SBS	Chr8	9771567	A-G	HOMO
SBS	Chr9	14052310	G-A	HET
SBS	Chr10	9100375	C-T	HOMO
SBS	Chr10	17046381	T-A	HOMO
SBS	Chr11	1572293	T-G	HET
SBS	Chr11	3021973	G-A	HET
SBS	Chr11	3021975	G-T	HET
SBS	Chr11	22553862	C-T	HOMO
SBS	Chr12	6894980	C-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4646264	4646478	215
Deletion	Chr1	7042746	7042748	3
Deletion	Chr6	9531843	9531845	3
Deletion	Chr6	9532266	9532266	1
Deletion	Chr4	11938048	11938055	8
Deletion	Chr3	15794115	15794123	9	OsKitaake03g202300
Deletion	Chr6	16683988	16683988	1
Deletion	Chr5	20931399	20931399	1
Deletion	Chr3	24553001	24594000	41000	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4892099	4892356
Inversion	Chr5	11953625	12022691
Inversion	Chr3	25132956	25133096
Inversion	Chr3	32429839	32454190	OsKitaake03g343350
Inversion	Chr4	35628280	35628499

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes