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Mutant Information

Mutant Name	FN447-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN447-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16516063 G-T Homo INTERGENIC
SBS Chr1 23585108 C-T Homo INTERGENIC
SBS Chr1 28927149 C-A Hetero INTERGENIC
SBS Chr2 11814254 C-T Homo INTRON
SBS Chr2 17001250 G-C Hetero INTERGENIC
SBS Chr2 17056031 G-T Homo INTERGENIC
SBS Chr2 20676107 T-A Homo INTERGENIC
SBS Chr2 30444547 C-T Hetero INTRON
SBS Chr3 3996388 A-T Homo INTERGENIC
SBS Chr3 15972040 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g204400
SBS Chr3 18929936 C-T Hetero INTERGENIC
SBS Chr4 15989247 C-G Hetero INTERGENIC
SBS Chr4 22459470 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g132100
SBS Chr4 33711710 C-T Hetero INTRON
SBS Chr4 36278704 C-G Hetero INTERGENIC
SBS Chr5 991787 A-T Hetero INTERGENIC
SBS Chr5 7384997 G-A Hetero INTERGENIC
SBS Chr5 15993682 G-A Homo INTERGENIC
SBS Chr5 17078074 G-A Hetero INTERGENIC
SBS Chr5 18650663 T-C Hetero INTERGENIC
SBS Chr6 26027877 T-A Hetero INTERGENIC
SBS Chr7 22880850 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 25369049 C-A Hetero INTERGENIC
SBS Chr8 8166767 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g074800
SBS Chr8 17700070 C-G Homo INTERGENIC
SBS Chr8 18306105 C-T Hetero INTERGENIC
SBS Chr9 1033594 G-T Hetero INTERGENIC
SBS Chr9 1033595 C-T Hetero INTERGENIC
SBS Chr9 10252538 G-T Hetero INTERGENIC
SBS Chr9 11601980 G-A Hetero INTERGENIC
SBS Chr10 11931708 A-T Hetero INTERGENIC
SBS Chr11 8516073 T-G Homo INTERGENIC
SBS Chr12 1334790 C-A Hetero INTRON
SBS Chr12 9001127 G-T Homo INTERGENIC
SBS Chr12 26311977 C-T Hetero INTERGENIC
SBS Chr12 27059830 G-T Hetero UTR_3_PRIME

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2606344 2606345 1
Deletion Chr7 3245881 3245895 14
Deletion Chr1 4012195 4012200 5 OsKitaake01g054000
Deletion Chr6 5698794 5698796 2
Deletion Chr1 10879746 10879749 3
Deletion Chr2 15528001 15578000 49999 2
Deletion Chr9 15554838 15554935 97
Deletion Chr5 18101001 18220000 118999 11
Deletion Chr12 22379001 22396000 16999 OsKitaake12g175732
Deletion Chr7 23694001 23712000 17999 OsKitaake07g208300
Deletion Chr1 24905698 24905702 4
Deletion Chr1 26680992 26680994 2
Deletion Chr3 27331308 27331313 5
Deletion Chr1 31106752 31106759 7
Deletion Chr3 33142001 33283000 140999 13

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4788774 4788776 1
Insertion Chr6 15572 15574 1
Insertion Chr12 11697894 11697897 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15504008 15795097 2
Inversion Chr2 15504025 15800408 2
Inversion Chr5 17799589 18103663
Inversion Chr5 17799594 18228431
Inversion Chr6 29095432 29219395 2
Inversion Chr6 29095449 29219397 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 30286807 Chr3 24203293

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16516063	G-T	Homo	INTERGENIC
SBS	Chr1	23585108	C-T	Homo	INTERGENIC
SBS	Chr1	28927149	C-A	Hetero	INTERGENIC
SBS	Chr2	11814254	C-T	Homo	INTRON
SBS	Chr2	17001250	G-C	Hetero	INTERGENIC
SBS	Chr2	17056031	G-T	Homo	INTERGENIC
SBS	Chr2	20676107	T-A	Homo	INTERGENIC
SBS	Chr2	30444547	C-T	Hetero	INTRON
SBS	Chr3	3996388	A-T	Homo	INTERGENIC
SBS	Chr3	15972040	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g204400
SBS	Chr3	18929936	C-T	Hetero	INTERGENIC
SBS	Chr4	15989247	C-G	Hetero	INTERGENIC
SBS	Chr4	22459470	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g132100
SBS	Chr4	33711710	C-T	Hetero	INTRON
SBS	Chr4	36278704	C-G	Hetero	INTERGENIC
SBS	Chr5	991787	A-T	Hetero	INTERGENIC
SBS	Chr5	7384997	G-A	Hetero	INTERGENIC
SBS	Chr5	15993682	G-A	Homo	INTERGENIC
SBS	Chr5	17078074	G-A	Hetero	INTERGENIC
SBS	Chr5	18650663	T-C	Hetero	INTERGENIC
SBS	Chr6	26027877	T-A	Hetero	INTERGENIC
SBS	Chr7	22880850	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	25369049	C-A	Hetero	INTERGENIC
SBS	Chr8	8166767	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g074800
SBS	Chr8	17700070	C-G	Homo	INTERGENIC
SBS	Chr8	18306105	C-T	Hetero	INTERGENIC
SBS	Chr9	1033594	G-T	Hetero	INTERGENIC
SBS	Chr9	1033595	C-T	Hetero	INTERGENIC
SBS	Chr9	10252538	G-T	Hetero	INTERGENIC
SBS	Chr9	11601980	G-A	Hetero	INTERGENIC
SBS	Chr10	11931708	A-T	Hetero	INTERGENIC
SBS	Chr11	8516073	T-G	Homo	INTERGENIC
SBS	Chr12	1334790	C-A	Hetero	INTRON
SBS	Chr12	9001127	G-T	Homo	INTERGENIC
SBS	Chr12	26311977	C-T	Hetero	INTERGENIC
SBS	Chr12	27059830	G-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2606344	2606345	1
Deletion	Chr7	3245881	3245895	14
Deletion	Chr1	4012195	4012200	5	OsKitaake01g054000
Deletion	Chr6	5698794	5698796	2
Deletion	Chr1	10879746	10879749	3
Deletion	Chr2	15528001	15578000	49999	2
Deletion	Chr9	15554838	15554935	97
Deletion	Chr5	18101001	18220000	118999	11
Deletion	Chr12	22379001	22396000	16999	OsKitaake12g175732
Deletion	Chr7	23694001	23712000	17999	OsKitaake07g208300
Deletion	Chr1	24905698	24905702	4
Deletion	Chr1	26680992	26680994	2
Deletion	Chr3	27331308	27331313	5
Deletion	Chr1	31106752	31106759	7
Deletion	Chr3	33142001	33283000	140999	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15504008	15795097	2
Inversion	Chr2	15504025	15800408	2
Inversion	Chr5	17799589	18103663
Inversion	Chr5	17799594	18228431
Inversion	Chr6	29095432	29219395	2
Inversion	Chr6	29095449	29219397	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes