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| Mutant Information |
|---|
| Mutant Name | FN4471-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4471-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7907437 | G-T | HET | ||
| SBS | Chr1 | 9131948 | T-C | HET | ||
| SBS | Chr1 | 31346811 | G-A | HOMO | ||
| SBS | Chr1 | 31929310 | G-A | HET | ||
| SBS | Chr1 | 38920319 | G-A | HOMO | ||
| SBS | Chr2 | 7144937 | G-A | HET | ||
| SBS | Chr3 | 3236119 | C-T | HET | ||
| SBS | Chr3 | 13659546 | C-T | HOMO | ||
| SBS | Chr4 | 11495805 | G-T | HOMO | ||
| SBS | Chr4 | 16104190 | G-T | HET | ||
| SBS | Chr4 | 18968223 | G-T | HET | ||
| SBS | Chr4 | 21701629 | T-C | HOMO | ||
| SBS | Chr5 | 17727992 | C-T | HOMO | ||
| SBS | Chr6 | 3127318 | G-C | HET | ||
| SBS | Chr7 | 2921611 | A-G | HOMO | ||
| SBS | Chr7 | 8569752 | G-T | HOMO | ||
| SBS | Chr8 | 12855668 | G-A | HET | ||
| SBS | Chr8 | 13518539 | T-C | HOMO | ||
| SBS | Chr8 | 17414660 | T-C | HET | ||
| SBS | Chr8 | 26638532 | A-T | HET | ||
| SBS | Chr9 | 1331837 | C-T | HET | ||
| SBS | Chr9 | 8283492 | G-A | HET | ||
| SBS | Chr9 | 10257528 | C-T | HOMO | ||
| SBS | Chr9 | 22452965 | C-T | HET | ||
| SBS | Chr10 | 6596234 | G-A | HET | ||
| SBS | Chr10 | 7412822 | G-A | HET | ||
| SBS | Chr10 | 7708647 | C-T | HET | ||
| SBS | Chr10 | 19472841 | T-C | HET | ||
| SBS | Chr11 | 25831772 | G-C | HET | ||
| SBS | Chr12 | 2814247 | G-A | HET | OsKitaake12g042200 | |
| SBS | Chr12 | 11811740 | G-T | HOMO | ||
| SBS | Chr12 | 13060423 | A-G | HET |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 187800 | 187803 | 4 | |
| Deletion | Chr5 | 1297280 | 1297290 | 11 | |
| Deletion | Chr7 | 2929832 | 2929835 | 4 | |
| Deletion | Chr7 | 2997058 | 2997070 | 13 | |
| Deletion | Chr9 | 5594311 | 5594316 | 6 | |
| Deletion | Chr7 | 6372716 | 6372716 | 1 | |
| Deletion | Chr5 | 6830672 | 6830673 | 2 | |
| Deletion | Chr2 | 7719885 | 7719885 | 1 | OsKitaake02g101100 |
| Deletion | Chr1 | 8521604 | 8521612 | 9 | OsKitaake01g106500 |
| Deletion | Chr3 | 9081682 | 9081687 | 6 | |
| Deletion | Chr1 | 9646001 | 9661000 | 15000 | OsKitaake01g123400 |
| Deletion | Chr10 | 10310149 | 10310149 | 1 | |
| Deletion | Chr12 | 10938001 | 10963000 | 25000 | 2 |
| Deletion | Chr2 | 12523111 | 12523111 | 1 | |
| Deletion | Chr6 | 14675324 | 14675324 | 1 | |
| Deletion | Chr1 | 18187981 | 18187981 | 1 | |
| Deletion | Chr12 | 18219557 | 18219570 | 14 | |
| Deletion | Chr4 | 22237081 | 22237104 | 24 | |
| Deletion | Chr6 | 27917001 | 27947000 | 30000 | 2 |
| Deletion | Chr5 | 28148183 | 28148187 | 5 | |
| Deletion | Chr6 | 29887187 | 29887187 | 1 | |
| Deletion | Chr6 | 29887193 | 29887193 | 1 | |
| Deletion | Chr1 | 32075693 | 32075693 | 1 |
Insertions: 7
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 30163279 | 30170838 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 17663856 | Chr4 | 5997812 |