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| Mutant Information |
|---|
| Mutant Name | FN4472-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4472-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 50
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18179798 | C-T | HET | ||
| SBS | Chr1 | 22637664 | C-T | HET | ||
| SBS | Chr1 | 30504217 | G-C | HOMO | ||
| SBS | Chr1 | 32603854 | C-A | HET | ||
| SBS | Chr1 | 42052868 | C-T | HET | ||
| SBS | Chr2 | 33437903 | T-A | HET | ||
| SBS | Chr2 | 33437904 | G-T | HET | ||
| SBS | Chr3 | 10449032 | G-A | HET | ||
| SBS | Chr3 | 11331670 | C-T | HOMO | ||
| SBS | Chr3 | 25300972 | C-T | HET | ||
| SBS | Chr3 | 29799504 | G-A | HOMO | OsKitaake03g311500 | |
| SBS | Chr3 | 29799507 | T-A | HOMO | OsKitaake03g311500 | |
| SBS | Chr4 | 45135 | C-T | HET | ||
| SBS | Chr4 | 8900353 | T-C | HET | ||
| SBS | Chr4 | 29352545 | A-G | HET | ||
| SBS | Chr4 | 31077943 | C-T | HOMO | OsKitaake04g241800 | |
| SBS | Chr4 | 31077944 | A-T | HOMO | OsKitaake04g241800 | |
| SBS | Chr4 | 31077948 | A-T | HOMO | ||
| SBS | Chr5 | 480167 | C-A | HET | ||
| SBS | Chr5 | 9892196 | A-G | HET | ||
| SBS | Chr5 | 22127209 | A-C | HET | ||
| SBS | Chr5 | 27352059 | T-A | HET | ||
| SBS | Chr6 | 998998 | G-T | HET | ||
| SBS | Chr6 | 4724482 | C-T | HET | ||
| SBS | Chr6 | 16820080 | G-T | HET | ||
| SBS | Chr6 | 19564859 | G-A | HET | ||
| SBS | Chr7 | 24265639 | C-T | HET | ||
| SBS | Chr8 | 2199550 | T-C | HET | ||
| SBS | Chr8 | 11840782 | A-T | HET | ||
| SBS | Chr8 | 14701941 | G-A | HET | ||
| SBS | Chr8 | 17940114 | T-C | HOMO | ||
| SBS | Chr8 | 22726011 | A-G | HET | ||
| SBS | Chr8 | 25019565 | G-A | HET | ||
| SBS | Chr8 | 28260942 | G-A | HET | ||
| SBS | Chr8 | 28629686 | G-A | HET | ||
| SBS | Chr10 | 7467693 | G-A | HOMO | ||
| SBS | Chr10 | 8491474 | C-T | HOMO | ||
| SBS | Chr10 | 12107453 | G-A | HET | ||
| SBS | Chr10 | 23350368 | G-A | HET | ||
| SBS | Chr11 | 20152590 | G-A | HET | ||
| SBS | Chr11 | 23598436 | T-C | HET | ||
| SBS | Chr11 | 24744872 | C-T | HET | OsKitaake11g200800 | |
| SBS | Chr11 | 28589655 | T-C | HET | ||
| SBS | Chr12 | 1954994 | G-A | HET | OsKitaake12g030400 | |
| SBS | Chr12 | 3672388 | G-T | HET | ||
| SBS | Chr12 | 4947175 | A-G | HET | ||
| SBS | Chr12 | 5958308 | G-A | HET | ||
| SBS | Chr12 | 7473401 | G-A | HET | ||
| SBS | Chr12 | 8597145 | G-A | HET | ||
| SBS | Chr12 | 12405305 | C-T | HET |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 204529 | 204529 | 1 | |
| Deletion | Chr4 | 2061804 | 2061811 | 8 | OsKitaake04g013800 |
| Deletion | Chr8 | 2849001 | 2969000 | 120000 | 13 |
| Deletion | Chr10 | 3891528 | 3891532 | 5 | |
| Deletion | Chr9 | 5248001 | 5265000 | 17000 | OsKitaake09g030250 |
| Deletion | Chr5 | 9822027 | 9822027 | 1 | |
| Deletion | Chr2 | 11088740 | 11088761 | 22 | |
| Deletion | Chr10 | 11375666 | 11375666 | 1 | |
| Deletion | Chr12 | 11744425 | 11744425 | 1 | |
| Deletion | Chr8 | 14271952 | 14271953 | 2 | |
| Deletion | Chr8 | 16277768 | 16277786 | 19 | |
| Deletion | Chr12 | 22826970 | 22826971 | 2 | |
| Deletion | Chr3 | 27096896 | 27096902 | 7 | |
| Deletion | Chr8 | 28387001 | 28401000 | 14000 | 2 |
| Deletion | Chr8 | 28410001 | 28430000 | 20000 | 3 |
| Deletion | Chr1 | 31785678 | 31785679 | 2 | |
| Deletion | Chr1 | 43809803 | 43809807 | 5 |
Insertions: 13
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 13549078 | 13549282 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 27484274 | Chr1 | 41076643 | |
| Translocation | Chr5 | 27488057 | Chr1 | 41076642 |