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| Mutant Information |
|---|
| Mutant Name | FN4473-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4473-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16340920 | T-A | HET | ||
| SBS | Chr1 | 34900283 | T-C | HOMO | ||
| SBS | Chr1 | 34900286 | T-C | HOMO | ||
| SBS | Chr2 | 436099 | G-A | HET | ||
| SBS | Chr2 | 10433590 | A-G | HET | ||
| SBS | Chr2 | 11725358 | T-G | HET | ||
| SBS | Chr2 | 31126006 | G-T | HOMO | ||
| SBS | Chr2 | 32492086 | C-T | HOMO | ||
| SBS | Chr3 | 26718986 | G-A | HET | ||
| SBS | Chr3 | 37130691 | C-A | HOMO | ||
| SBS | Chr4 | 2214099 | T-C | HOMO | ||
| SBS | Chr4 | 5779860 | C-T | HOMO | ||
| SBS | Chr4 | 20970154 | G-T | HOMO | ||
| SBS | Chr6 | 8533756 | C-A | HOMO | ||
| SBS | Chr6 | 22686461 | A-G | HET | ||
| SBS | Chr7 | 4105552 | T-C | HET | ||
| SBS | Chr7 | 7281804 | T-G | HOMO | ||
| SBS | Chr7 | 11807241 | C-G | HET | ||
| SBS | Chr7 | 13379071 | C-A | HET | ||
| SBS | Chr7 | 28405358 | C-A | HOMO | ||
| SBS | Chr9 | 2950465 | A-G | HOMO | ||
| SBS | Chr10 | 2539400 | A-T | HOMO | ||
| SBS | Chr10 | 10426639 | A-G | HET | ||
| SBS | Chr10 | 11894368 | G-A | HOMO | ||
| SBS | Chr11 | 212369 | A-G | HET | ||
| SBS | Chr11 | 1461149 | C-T | HET | ||
| SBS | Chr12 | 2765368 | G-A | HOMO | ||
| SBS | Chr12 | 9286971 | G-C | HET | ||
| SBS | Chr12 | 26826734 | C-A | HOMO |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1808064 | 1808064 | 1 | |
| Deletion | Chr2 | 1965045 | 1965046 | 2 | |
| Deletion | Chr9 | 7565001 | 7588000 | 23000 | OsKitaake09g043000 |
| Deletion | Chr9 | 7594001 | 7622000 | 28000 | |
| Deletion | Chr9 | 7624001 | 7658000 | 34000 | 2 |
| Deletion | Chr9 | 7665001 | 7682000 | 17000 | OsKitaake09g043400 |
| Deletion | Chr9 | 7692001 | 7805000 | 113000 | 4 |
| Deletion | Chr7 | 13376816 | 13376816 | 1 | 2 |
| Deletion | Chr10 | 13383491 | 13383492 | 2 | OsKitaake10g080000 |
| Deletion | Chr12 | 17048826 | 17048826 | 1 | |
| Deletion | Chr10 | 17200220 | 17200308 | 89 | |
| Deletion | Chr8 | 21079298 | 21079298 | 1 | |
| Deletion | Chr12 | 22328310 | 22328311 | 2 | |
| Deletion | Chr8 | 23327913 | 23327913 | 1 | |
| Deletion | Chr4 | 24171421 | 24171421 | 1 | |
| Deletion | Chr4 | 24461673 | 24461673 | 1 | |
| Deletion | Chr4 | 25322450 | 25322461 | 12 | OsKitaake04g172300 |
| Deletion | Chr8 | 25871992 | 25871992 | 1 |
Insertions: 6
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 10736986 | 10737251 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 7566832 | Chr3 | 22122171 | |
| Translocation | Chr9 | 16012583 | Chr8 | 15842948 | |
| Translocation | Chr11 | 24409530 | Chr5 | 25517191 | OsKitaake05g223300 |