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Mutant Information 

Mutant NameFN4474-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4474-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr12343304G-AHET
SBS  Chr113709519G-AHET
SBS  Chr118708243A-THET
SBS  Chr216588392G-AHOMO
SBS  Chr34740044T-CHET
SBS  Chr39990901T-CHOMO
SBS  Chr310803229C-THET
SBS  Chr316838992C-THET
SBS  Chr327730891A-THET
SBS  Chr330049231A-GHET
SBS  Chr330350962G-AHET
SBS  Chr42551035G-AHET
SBS  Chr410564896C-THET
SBS  Chr415901368C-THET
SBS  Chr416932942G-AHET
SBS  Chr427795723T-AHET
SBS  Chr58888393G-THET
SBS  Chr58888394G-THET
SBS  Chr58888395C-THET
SBS  Chr512771523T-GHET
SBS  Chr513939154G-THET
SBS  Chr516704530A-GHET
SBS  Chr517037603A-GHET
SBS  Chr519334913T-CHOMO
SBS  Chr65767848C-THOMO
SBS  Chr612088099C-THOMO
SBS  Chr613171666T-CHOMO
SBS  Chr614334475C-THOMO
SBS  Chr626132099C-AHOMO
SBS  Chr712059107G-THET
SBS  Chr712059108G-THET
SBS  Chr727628134A-GHOMO
SBS  Chr728665025A-CHOMO
SBS  Chr822865592C-THET
SBS  Chr828611099A-GHET
SBS  Chr95661148C-THET
SBS  Chr10477962A-GHET
SBS  Chr103129186G-AHET
SBS  Chr105947082C-THOMO
SBS  Chr106890832T-AHOMO
SBS  Chr119980555C-AHOMO
SBS  Chr1117603339T-AHOMO
SBS  Chr1127196977C-THET

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr9235651323565131
Deletion  Chr12424361342436131
Deletion  Chr5430859943086046
Deletion  Chr11527209452720941OsKitaake11g066433
Deletion  Chr46232047623206418
Deletion  Chr7680317168031722
Deletion  Chr2872180687218061
Deletion  Chr212029016120290161
Deletion  Chr4128017281280173811
Deletion  Chr1213777665137776651
Deletion  Chr10151616531516166614
Deletion  Chr1015229131152291311
Deletion  Chr11156427821564278322
Deletion  Chr1116074147160741493
Deletion  Chr718624118186241181
Deletion  Chr624033435240334373
Deletion  Chr131671969316719691
Deletion  Chr434886043348860431
Deletion  Chr138385055383850551
Deletion  Chr140304657403046593OsKitaake01g437400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr220292784202927861
Insertion  Chr322757832227578341
Insertion  Chr127902018279020201
Insertion  Chr132986575329865771

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr72626138126691739OsKitaake07g241300
Inversion  Chr72626139526691745OsKitaake07g241300
Inversion  Chr112692726126927430

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr1113364622Chr410438377OsKitaake04g055550