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Mutant Information |
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Mutant Name | FN4474-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4474-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 2343304 | G-A | HET | ||
SBS | Chr1 | 13709519 | G-A | HET | ||
SBS | Chr1 | 18708243 | A-T | HET | ||
SBS | Chr2 | 16588392 | G-A | HOMO | ||
SBS | Chr3 | 4740044 | T-C | HET | ||
SBS | Chr3 | 9990901 | T-C | HOMO | ||
SBS | Chr3 | 10803229 | C-T | HET | ||
SBS | Chr3 | 16838992 | C-T | HET | ||
SBS | Chr3 | 27730891 | A-T | HET | ||
SBS | Chr3 | 30049231 | A-G | HET | ||
SBS | Chr3 | 30350962 | G-A | HET | ||
SBS | Chr4 | 2551035 | G-A | HET | ||
SBS | Chr4 | 10564896 | C-T | HET | ||
SBS | Chr4 | 15901368 | C-T | HET | ||
SBS | Chr4 | 16932942 | G-A | HET | ||
SBS | Chr4 | 27795723 | T-A | HET | ||
SBS | Chr5 | 8888393 | G-T | HET | ||
SBS | Chr5 | 8888394 | G-T | HET | ||
SBS | Chr5 | 8888395 | C-T | HET | ||
SBS | Chr5 | 12771523 | T-G | HET | ||
SBS | Chr5 | 13939154 | G-T | HET | ||
SBS | Chr5 | 16704530 | A-G | HET | ||
SBS | Chr5 | 17037603 | A-G | HET | ||
SBS | Chr5 | 19334913 | T-C | HOMO | ||
SBS | Chr6 | 5767848 | C-T | HOMO | ||
SBS | Chr6 | 12088099 | C-T | HOMO | ||
SBS | Chr6 | 13171666 | T-C | HOMO | ||
SBS | Chr6 | 14334475 | C-T | HOMO | ||
SBS | Chr6 | 26132099 | C-A | HOMO | ||
SBS | Chr7 | 12059107 | G-T | HET | ||
SBS | Chr7 | 12059108 | G-T | HET | ||
SBS | Chr7 | 27628134 | A-G | HOMO | ||
SBS | Chr7 | 28665025 | A-C | HOMO | ||
SBS | Chr8 | 22865592 | C-T | HET | ||
SBS | Chr8 | 28611099 | A-G | HET | ||
SBS | Chr9 | 5661148 | C-T | HET | ||
SBS | Chr10 | 477962 | A-G | HET | ||
SBS | Chr10 | 3129186 | G-A | HET | ||
SBS | Chr10 | 5947082 | C-T | HOMO | ||
SBS | Chr10 | 6890832 | T-A | HOMO | ||
SBS | Chr11 | 9980555 | C-A | HOMO | ||
SBS | Chr11 | 17603339 | T-A | HOMO | ||
SBS | Chr11 | 27196977 | C-T | HET |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr9 | 2356513 | 2356513 | 1 | |
Deletion | Chr12 | 4243613 | 4243613 | 1 | |
Deletion | Chr5 | 4308599 | 4308604 | 6 | |
Deletion | Chr11 | 5272094 | 5272094 | 1 | OsKitaake11g066433 |
Deletion | Chr4 | 6232047 | 6232064 | 18 | |
Deletion | Chr7 | 6803171 | 6803172 | 2 | |
Deletion | Chr2 | 8721806 | 8721806 | 1 | |
Deletion | Chr2 | 12029016 | 12029016 | 1 | |
Deletion | Chr4 | 12801728 | 12801738 | 11 | |
Deletion | Chr12 | 13777665 | 13777665 | 1 | |
Deletion | Chr10 | 15161653 | 15161666 | 14 | |
Deletion | Chr10 | 15229131 | 15229131 | 1 | |
Deletion | Chr11 | 15642782 | 15642783 | 2 | 2 |
Deletion | Chr11 | 16074147 | 16074149 | 3 | |
Deletion | Chr7 | 18624118 | 18624118 | 1 | |
Deletion | Chr6 | 24033435 | 24033437 | 3 | |
Deletion | Chr1 | 31671969 | 31671969 | 1 | |
Deletion | Chr4 | 34886043 | 34886043 | 1 | |
Deletion | Chr1 | 38385055 | 38385055 | 1 | |
Deletion | Chr1 | 40304657 | 40304659 | 3 | OsKitaake01g437400 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr2 | 20292784 | 20292786 | 1 | |
Insertion | Chr3 | 22757832 | 22757834 | 1 | |
Insertion | Chr1 | 27902018 | 27902020 | 1 | |
Insertion | Chr1 | 32986575 | 32986577 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr7 | 26261381 | 26691739 | OsKitaake07g241300 |
Inversion | Chr7 | 26261395 | 26691745 | OsKitaake07g241300 |
Inversion | Chr11 | 26927261 | 26927430 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 13364622 | Chr4 | 10438377 | OsKitaake04g055550 |