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Mutant Information 

Mutant NameFN4476-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4476-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr114330978C-THOMO
SBS  Chr130894154G-CHETOsKitaake01g307200
SBS  Chr135004305C-THET
SBS  Chr23625727C-THET
SBS  Chr213708354A-GHET
SBS  Chr215495373A-GHET
SBS  Chr221505372A-GHETOsKitaake02g207900
SBS  Chr222377171G-AHET
SBS  Chr314103395C-THET
SBS  Chr315729595C-THET
SBS  Chr318833471G-THET
SBS  Chr326222080A-THET
SBS  Chr334539191T-CHET
SBS  Chr42594531G-CHET
SBS  Chr429691893G-CHOMO
SBS  Chr430536856A-THOMO
SBS  Chr52230976A-GHET
SBS  Chr52952353G-AHOMO
SBS  Chr514634332T-AHET
SBS  Chr611495094C-THET
SBS  Chr612953723G-AHET
SBS  Chr614569766C-THET
SBS  Chr620149495C-THOMO
SBS  Chr622078476T-AHOMO
SBS  Chr625800286T-CHOMO
SBS  Chr720770368A-THOMO
SBS  Chr720770369C-THOMO
SBS  Chr721620212G-AHOMO
SBS  Chr814176098T-CHET
SBS  Chr820480430T-AHOMO
SBS  Chr825081188C-AHETOsKitaake08g194700
SBS  Chr910545058T-CHET
SBS  Chr920039252C-AHET
SBS  Chr1012817068A-GHOMO
SBS  Chr1014667410T-CHET
SBS  Chr1014688447C-AHOMO
SBS  Chr1018870575G-THOMO
SBS  Chr1019115434C-GHOMO
SBS  Chr115520997T-CHETOsKitaake11g067600
SBS  Chr118124955G-AHOMO
SBS  Chr128263505A-GHET
SBS  Chr1215141828A-THET
SBS  Chr1215375513G-CHET
SBS  Chr1219843125A-THET

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr11180657118065711OsKitaake11g025100
Deletion  Chr10213464821346547
Deletion  Chr3301394130139422
Deletion  Chr7581736958173757
Deletion  Chr8883569088356901
Deletion  Chr1010114216101142161
Deletion  Chr713581785135817939
Deletion  Chr814190759141907591
Deletion  Chr614763060147630601
Deletion  Chr914805699148056991
Deletion  Chr715914809159148146
Deletion  Chr1217510193175101931
Deletion  Chr8179334961793350510
Deletion  Chr720169181201691811
Deletion  Chr7211079442110795411
Deletion  Chr4225781732257820836
Deletion  Chr8250619482506196013
Deletion  Chr325353707253537071
Deletion  Chr826368501263685011
Deletion  Chr1266637182666373619
Deletion  Chr131079479310794791

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr1452805745280602
Insertion  Chr724950103249501051
Insertion  Chr140323406403234081
Insertion  Chr1210577077105770791

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr2756159756269OsKitaake02g010500
Inversion  Chr297135189829121
Inversion  Chr2982927110256621
Inversion  Chr21025539310256618
Inversion  Chr102300257923002819

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr7187603Chr23213312
Translocation  Chr7188188Chr218238909
Translocation  Chr1013882810Chr76740286