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Mutant Information |
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Mutant Name | FN4476-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4476-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 44
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 14330978 | C-T | HOMO | ||
SBS | Chr1 | 30894154 | G-C | HET | OsKitaake01g307200 | |
SBS | Chr1 | 35004305 | C-T | HET | ||
SBS | Chr2 | 3625727 | C-T | HET | ||
SBS | Chr2 | 13708354 | A-G | HET | ||
SBS | Chr2 | 15495373 | A-G | HET | ||
SBS | Chr2 | 21505372 | A-G | HET | OsKitaake02g207900 | |
SBS | Chr2 | 22377171 | G-A | HET | ||
SBS | Chr3 | 14103395 | C-T | HET | ||
SBS | Chr3 | 15729595 | C-T | HET | ||
SBS | Chr3 | 18833471 | G-T | HET | ||
SBS | Chr3 | 26222080 | A-T | HET | ||
SBS | Chr3 | 34539191 | T-C | HET | ||
SBS | Chr4 | 2594531 | G-C | HET | ||
SBS | Chr4 | 29691893 | G-C | HOMO | ||
SBS | Chr4 | 30536856 | A-T | HOMO | ||
SBS | Chr5 | 2230976 | A-G | HET | ||
SBS | Chr5 | 2952353 | G-A | HOMO | ||
SBS | Chr5 | 14634332 | T-A | HET | ||
SBS | Chr6 | 11495094 | C-T | HET | ||
SBS | Chr6 | 12953723 | G-A | HET | ||
SBS | Chr6 | 14569766 | C-T | HET | ||
SBS | Chr6 | 20149495 | C-T | HOMO | ||
SBS | Chr6 | 22078476 | T-A | HOMO | ||
SBS | Chr6 | 25800286 | T-C | HOMO | ||
SBS | Chr7 | 20770368 | A-T | HOMO | ||
SBS | Chr7 | 20770369 | C-T | HOMO | ||
SBS | Chr7 | 21620212 | G-A | HOMO | ||
SBS | Chr8 | 14176098 | T-C | HET | ||
SBS | Chr8 | 20480430 | T-A | HOMO | ||
SBS | Chr8 | 25081188 | C-A | HET | OsKitaake08g194700 | |
SBS | Chr9 | 10545058 | T-C | HET | ||
SBS | Chr9 | 20039252 | C-A | HET | ||
SBS | Chr10 | 12817068 | A-G | HOMO | ||
SBS | Chr10 | 14667410 | T-C | HET | ||
SBS | Chr10 | 14688447 | C-A | HOMO | ||
SBS | Chr10 | 18870575 | G-T | HOMO | ||
SBS | Chr10 | 19115434 | C-G | HOMO | ||
SBS | Chr11 | 5520997 | T-C | HET | OsKitaake11g067600 | |
SBS | Chr11 | 8124955 | G-A | HOMO | ||
SBS | Chr12 | 8263505 | A-G | HET | ||
SBS | Chr12 | 15141828 | A-T | HET | ||
SBS | Chr12 | 15375513 | G-C | HET | ||
SBS | Chr12 | 19843125 | A-T | HET |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr11 | 1806571 | 1806571 | 1 | OsKitaake11g025100 |
Deletion | Chr10 | 2134648 | 2134654 | 7 | |
Deletion | Chr3 | 3013941 | 3013942 | 2 | |
Deletion | Chr7 | 5817369 | 5817375 | 7 | |
Deletion | Chr8 | 8835690 | 8835690 | 1 | |
Deletion | Chr10 | 10114216 | 10114216 | 1 | |
Deletion | Chr7 | 13581785 | 13581793 | 9 | |
Deletion | Chr8 | 14190759 | 14190759 | 1 | |
Deletion | Chr6 | 14763060 | 14763060 | 1 | |
Deletion | Chr9 | 14805699 | 14805699 | 1 | |
Deletion | Chr7 | 15914809 | 15914814 | 6 | |
Deletion | Chr12 | 17510193 | 17510193 | 1 | |
Deletion | Chr8 | 17933496 | 17933505 | 10 | |
Deletion | Chr7 | 20169181 | 20169181 | 1 | |
Deletion | Chr7 | 21107944 | 21107954 | 11 | |
Deletion | Chr4 | 22578173 | 22578208 | 36 | |
Deletion | Chr8 | 25061948 | 25061960 | 13 | |
Deletion | Chr3 | 25353707 | 25353707 | 1 | |
Deletion | Chr8 | 26368501 | 26368501 | 1 | |
Deletion | Chr1 | 26663718 | 26663736 | 19 | |
Deletion | Chr1 | 31079479 | 31079479 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 4528057 | 4528060 | 2 | |
Insertion | Chr7 | 24950103 | 24950105 | 1 | |
Insertion | Chr1 | 40323406 | 40323408 | 1 | |
Insertion | Chr12 | 10577077 | 10577079 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 756159 | 756269 | OsKitaake02g010500 |
Inversion | Chr2 | 9713518 | 9829121 | |
Inversion | Chr2 | 9829271 | 10256621 | |
Inversion | Chr2 | 10255393 | 10256618 | |
Inversion | Chr10 | 23002579 | 23002819 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr7 | 187603 | Chr2 | 3213312 | |
Translocation | Chr7 | 188188 | Chr2 | 18238909 | |
Translocation | Chr10 | 13882810 | Chr7 | 6740286 |