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| Mutant Information |
|---|
| Mutant Name | FN4477-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4477-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23573306 | T-C | HET | ||
| SBS | Chr2 | 18386180 | T-A | HET | ||
| SBS | Chr2 | 21771631 | G-A | HOMO | ||
| SBS | Chr3 | 14716114 | A-T | HOMO | OsKitaake03g191300 | |
| SBS | Chr3 | 20172807 | A-G | HET | ||
| SBS | Chr3 | 20712289 | G-T | HOMO | OsKitaake03g231600 | |
| SBS | Chr3 | 34901401 | A-G | HOMO | ||
| SBS | Chr4 | 9792384 | G-C | HOMO | ||
| SBS | Chr4 | 15247843 | G-A | HOMO | ||
| SBS | Chr4 | 33108426 | T-G | HET | ||
| SBS | Chr4 | 35655881 | G-A | HET | ||
| SBS | Chr5 | 12290497 | G-A | HET | ||
| SBS | Chr6 | 29646141 | G-A | HET | ||
| SBS | Chr8 | 10255921 | G-A | HET | ||
| SBS | Chr8 | 15265952 | G-A | HOMO | ||
| SBS | Chr8 | 15265953 | T-G | HOMO | ||
| SBS | Chr8 | 27049810 | G-A | HET | ||
| SBS | Chr8 | 27325055 | T-C | HET | ||
| SBS | Chr9 | 3384158 | T-C | HOMO | ||
| SBS | Chr10 | 5752521 | A-G | HET | ||
| SBS | Chr10 | 13116398 | G-A | HET | ||
| SBS | Chr10 | 14491953 | G-C | HOMO | ||
| SBS | Chr10 | 18878108 | T-C | HET | ||
| SBS | Chr12 | 11583190 | T-C | HET | ||
| SBS | Chr12 | 16382440 | T-C | HET | ||
| SBS | Chr12 | 26180098 | G-A | HET | ||
| SBS | Chr12 | 26485126 | T-A | HOMO |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2316816 | 2316816 | 1 | |
| Deletion | Chr5 | 5943238 | 5943241 | 4 | |
| Deletion | Chr3 | 9322291 | 9322291 | 1 | |
| Deletion | Chr9 | 10057773 | 10057773 | 1 | |
| Deletion | Chr4 | 10754260 | 10754260 | 1 | |
| Deletion | Chr10 | 11256550 | 11256552 | 3 | |
| Deletion | Chr12 | 11677685 | 11677839 | 155 | |
| Deletion | Chr3 | 13032001 | 13065000 | 33000 | 2 |
| Deletion | Chr7 | 13072613 | 13072616 | 4 | |
| Deletion | Chr9 | 13106769 | 13106797 | 29 | |
| Deletion | Chr6 | 14051352 | 14051352 | 1 | |
| Deletion | Chr10 | 15257292 | 15257292 | 1 | |
| Deletion | Chr8 | 15882497 | 15882497 | 1 | |
| Deletion | Chr8 | 16577262 | 16577262 | 1 | |
| Deletion | Chr2 | 20437531 | 20437531 | 1 | |
| Deletion | Chr7 | 20454001 | 20587000 | 133000 | 6 |
| Deletion | Chr6 | 22349838 | 22349838 | 1 | |
| Deletion | Chr12 | 26874001 | 26933000 | 59000 | 10 |
| Deletion | Chr12 | 26933696 | 26933704 | 9 | OsKitaake12g225500 |
Insertions: 5
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 737013 | 737350 | |
| Inversion | Chr8 | 24284326 | 24284570 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 26933118 | Chr11 | 19369370 | OsKitaake12g225500 |
| Translocation | Chr11 | 29021446 | Chr3 | 18613027 |