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Mutant Information

Mutant Name	FN4478-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4478-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 3784169 A-G HET
SBS Chr2 13219953 C-T HOMO
SBS Chr2 17244915 C-A HOMO
SBS Chr2 17244919 T-A HOMO
SBS Chr2 17244922 A-T HOMO
SBS Chr2 17244923 G-T HOMO
SBS Chr3 6679633 G-A HOMO
SBS Chr3 16045532 C-A HET
SBS Chr3 20600716 G-A HET
SBS Chr3 25065704 C-T HOMO
SBS Chr3 27204874 C-T HET
SBS Chr5 1877482 C-A HET OsKitaake05g021000
SBS Chr5 9029861 C-T HOMO
SBS Chr6 3173760 G-C HET
SBS Chr6 9057209 C-T HET
SBS Chr6 22464048 C-T HET
SBS Chr7 6162836 G-A HET
SBS Chr7 7404463 T-C HET
SBS Chr7 11039254 G-A HET
SBS Chr7 13781475 C-T HET
SBS Chr7 23972006 T-G HOMO
SBS Chr7 25002096 C-A HOMO
SBS Chr8 3572904 C-T HET
SBS Chr8 14090871 G-A HET
SBS Chr8 15886341 A-G HET OsKitaake08g122500
SBS Chr8 15949321 G-T HET
SBS Chr8 28145282 G-T HOMO
SBS Chr9 1591790 C-T HET
SBS Chr9 10961656 A-C HET
SBS Chr9 12059660 A-G HET
SBS Chr9 12948514 C-T HET
SBS Chr9 21071343 C-G HET
SBS Chr10 8468637 C-T HET
SBS Chr10 9673139 T-C HOMO
SBS Chr10 14037312 C-A HET
SBS Chr10 16520741 A-T HET
SBS Chr12 8675731 C-A HET
SBS Chr12 12227707 C-A HOMO
SBS Chr12 20361802 C-T HET
SBS Chr12 21255227 A-G HET

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 483469 483482 14
Deletion Chr3 1138278 1138285 8
Deletion Chr12 1733489 1733492 4 OsKitaake12g026300
Deletion Chr3 2932313 2932335 23
Deletion Chr5 2960590 2960593 4
Deletion Chr9 4286202 4286202 1
Deletion Chr12 5411041 5411041 1
Deletion Chr8 5728826 5728836 11
Deletion Chr8 8543818 8543818 1
Deletion Chr1 9902570 9902575 6 OsKitaake01g125500
Deletion Chr8 10526678 10526682 5
Deletion Chr9 10555267 10555278 12
Deletion Chr8 10862077 10862092 16
Deletion Chr6 12468024 12468133 110
Deletion Chr6 12745859 12745871 13
Deletion Chr8 12900202 12900205 4
Deletion Chr8 13782245 13782246 2
Deletion Chr10 14505989 14505990 2
Deletion Chr10 15025011 15025024 14
Deletion Chr10 15589969 15589980 12
Deletion Chr3 15724407 15724408 2
Deletion Chr3 17500215 17500218 4
Deletion Chr6 19537976 19537977 2
Deletion Chr5 26376096 26376103 8 OsKitaake05g233100
Deletion Chr5 26619141 26619146 6
Deletion Chr11 28283001 28350000 67000 2
Deletion Chr1 35112315 35112317 3
Deletion Chr4 36445366 36445381 16

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 16766995 16766997 1
Insertion Chr1 8986546 8986548 1
Insertion Chr1 37296386 37296388 1
Insertion Chr2 22038385 22038387 1
Insertion Chr2 29211052 29211055 2
Insertion Chr3 12571225 12571227 1 OsKitaake03g169700
Insertion Chr11 18615664 18615667 2

Inversions: 12

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3319327 3319507
Inversion Chr9 3392575 3393286
Inversion Chr6 7833153 7833268
Inversion Chr3 9889889 9890054
Inversion Chr9 14479405 15278147 OsKitaake09g098200
Inversion Chr9 14479415 15278147 OsKitaake09g098200
Inversion Chr6 17219665 17219778
Inversion Chr3 19907993 19908194
Inversion Chr6 29151781 29683596
Inversion Chr6 29151840 29683606 OsKitaake06g269200
Inversion Chr3 32701436 33002360 2
Inversion Chr3 32701440 33002358 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9570679 Chr4 2859281

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	3784169	A-G	HET
SBS	Chr2	13219953	C-T	HOMO
SBS	Chr2	17244915	C-A	HOMO
SBS	Chr2	17244919	T-A	HOMO
SBS	Chr2	17244922	A-T	HOMO
SBS	Chr2	17244923	G-T	HOMO
SBS	Chr3	6679633	G-A	HOMO
SBS	Chr3	16045532	C-A	HET
SBS	Chr3	20600716	G-A	HET
SBS	Chr3	25065704	C-T	HOMO
SBS	Chr3	27204874	C-T	HET
SBS	Chr5	1877482	C-A	HET		OsKitaake05g021000
SBS	Chr5	9029861	C-T	HOMO
SBS	Chr6	3173760	G-C	HET
SBS	Chr6	9057209	C-T	HET
SBS	Chr6	22464048	C-T	HET
SBS	Chr7	6162836	G-A	HET
SBS	Chr7	7404463	T-C	HET
SBS	Chr7	11039254	G-A	HET
SBS	Chr7	13781475	C-T	HET
SBS	Chr7	23972006	T-G	HOMO
SBS	Chr7	25002096	C-A	HOMO
SBS	Chr8	3572904	C-T	HET
SBS	Chr8	14090871	G-A	HET
SBS	Chr8	15886341	A-G	HET		OsKitaake08g122500
SBS	Chr8	15949321	G-T	HET
SBS	Chr8	28145282	G-T	HOMO
SBS	Chr9	1591790	C-T	HET
SBS	Chr9	10961656	A-C	HET
SBS	Chr9	12059660	A-G	HET
SBS	Chr9	12948514	C-T	HET
SBS	Chr9	21071343	C-G	HET
SBS	Chr10	8468637	C-T	HET
SBS	Chr10	9673139	T-C	HOMO
SBS	Chr10	14037312	C-A	HET
SBS	Chr10	16520741	A-T	HET
SBS	Chr12	8675731	C-A	HET
SBS	Chr12	12227707	C-A	HOMO
SBS	Chr12	20361802	C-T	HET
SBS	Chr12	21255227	A-G	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	483469	483482	14
Deletion	Chr3	1138278	1138285	8
Deletion	Chr12	1733489	1733492	4	OsKitaake12g026300
Deletion	Chr3	2932313	2932335	23
Deletion	Chr5	2960590	2960593	4
Deletion	Chr9	4286202	4286202	1
Deletion	Chr12	5411041	5411041	1
Deletion	Chr8	5728826	5728836	11
Deletion	Chr8	8543818	8543818	1
Deletion	Chr1	9902570	9902575	6	OsKitaake01g125500
Deletion	Chr8	10526678	10526682	5
Deletion	Chr9	10555267	10555278	12
Deletion	Chr8	10862077	10862092	16
Deletion	Chr6	12468024	12468133	110
Deletion	Chr6	12745859	12745871	13
Deletion	Chr8	12900202	12900205	4
Deletion	Chr8	13782245	13782246	2
Deletion	Chr10	14505989	14505990	2
Deletion	Chr10	15025011	15025024	14
Deletion	Chr10	15589969	15589980	12
Deletion	Chr3	15724407	15724408	2
Deletion	Chr3	17500215	17500218	4
Deletion	Chr6	19537976	19537977	2
Deletion	Chr5	26376096	26376103	8	OsKitaake05g233100
Deletion	Chr5	26619141	26619146	6
Deletion	Chr11	28283001	28350000	67000	2
Deletion	Chr1	35112315	35112317	3
Deletion	Chr4	36445366	36445381	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3319327	3319507
Inversion	Chr9	3392575	3393286
Inversion	Chr6	7833153	7833268
Inversion	Chr3	9889889	9890054
Inversion	Chr9	14479405	15278147	OsKitaake09g098200
Inversion	Chr9	14479415	15278147	OsKitaake09g098200
Inversion	Chr6	17219665	17219778
Inversion	Chr3	19907993	19908194
Inversion	Chr6	29151781	29683596
Inversion	Chr6	29151840	29683606	OsKitaake06g269200
Inversion	Chr3	32701436	33002360	2
Inversion	Chr3	32701440	33002358	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes