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Mutant Information

Mutant Name	FN4480-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4480-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1869274 T-C HOMO
SBS Chr1 12635101 C-T HET
SBS Chr1 29130821 T-A HET
SBS Chr1 39314801 G-C HOMO
SBS Chr2 18055087 A-C HET
SBS Chr2 19983093 C-T HET
SBS Chr2 23133073 T-A HET
SBS Chr2 23528764 G-A HET
SBS Chr2 28974686 G-T HET
SBS Chr3 8935830 G-A HET
SBS Chr3 18516677 G-T HET
SBS Chr3 19220175 G-C HET
SBS Chr3 22618228 T-C HET
SBS Chr3 37159989 C-A HOMO
SBS Chr4 370677 G-A HOMO OsKitaake04g002200
SBS Chr4 4015826 G-A HOMO OsKitaake04g019500
SBS Chr4 10237104 C-T HOMO
SBS Chr4 24549603 G-T HOMO
SBS Chr5 8328210 C-T HET
SBS Chr5 8530434 C-T HET
SBS Chr6 83321 G-T HET
SBS Chr6 13437715 T-A HET
SBS Chr6 15136381 G-C HET
SBS Chr6 16191382 C-T HET
SBS Chr6 22088765 G-A HOMO
SBS Chr6 25319641 C-T HET OsKitaake06g224700
SBS Chr7 5376781 C-T HOMO
SBS Chr7 11094771 T-G HET
SBS Chr7 11928280 C-T HET
SBS Chr7 12132131 T-C HET
SBS Chr7 18168528 A-G HET
SBS Chr8 2577412 C-T HET
SBS Chr8 5723551 C-T HET
SBS Chr8 10411158 T-C HOMO
SBS Chr8 20251029 G-A HET
SBS Chr9 5261589 C-T HOMO
SBS Chr9 7060859 T-C HET
SBS Chr9 21618810 G-T HOMO
SBS Chr10 10680196 T-C HOMO
SBS Chr11 10114917 T-A HOMO
SBS Chr11 24383939 T-G HOMO
SBS Chr12 17529662 C-T HET

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 135706 135707 2
Deletion Chr12 616409 616409 1
Deletion Chr6 3436543 3436545 3 OsKitaake06g048200
Deletion Chr12 4080043 4080043 1 OsKitaake12g055600
Deletion Chr2 7467319 7467328 10
Deletion Chr6 9759046 9759046 1
Deletion Chr5 10630418 10630436 19
Deletion Chr8 11431001 11475000 44000 2
Deletion Chr9 12584210 12584213 4
Deletion Chr4 13262243 13262252 10
Deletion Chr10 15671138 15671140 3
Deletion Chr9 16065339 16065340 2
Deletion Chr1 16076781 16076782 2
Deletion Chr4 16232079 16232079 1
Deletion Chr2 18504245 18504250 6
Deletion Chr5 19530276 19530287 12
Deletion Chr9 19845678 19845681 4
Deletion Chr6 21196861 21196867 7
Deletion Chr4 24598416 24598416 1
Deletion Chr11 25024533 25024533 1
Deletion Chr5 25193660 25193670 11 OsKitaake05g219600
Deletion Chr2 28871001 28906000 35000 3
Deletion Chr7 29356254 29356261 8
Deletion Chr1 32911649 32911658 10
Deletion Chr1 34352655 34352655 1
Deletion Chr3 34977964 34977966 3
Deletion Chr4 35319807 35319813 7

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13236112 13236114 1
Insertion Chr2 5984089 5984091 1
Insertion Chr3 27642640 27642643 2
Insertion Chr4 17443532 17443534 1
Insertion Chr5 13096854 13096857 2
Insertion Chr6 1064348 1064352 3
Insertion Chr8 21873821 21873823 1
Insertion Chr8 28181663 28181665 1
Insertion Chr12 19267943 19267945 1
Insertion Chr3 9960358 9960361 2 OsKitaake03g136200
Insertion Chr5 1236013 1236015 1
Insertion Chr5 24553258 24553260 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 3995145 3995268
Inversion Chr5 14186463 14186595
Inversion Chr6 19218130 19218473
Inversion Chr4 26791262 26791647 OsKitaake04g193500
Inversion Chr3 32713315 32713664

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9652951 Chr10 2689877
Translocation Chr11 9652990 Chr10 2690163
Translocation Chr9 18681704 Chr4 21695194 OsKitaake09g147700
Translocation Chr9 18681710 Chr4 21695191 OsKitaake09g147700
Translocation Chr10 23020117 Chr6 15701592
Translocation Chr10 23020122 Chr6 13952582

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1869274	T-C	HOMO
SBS	Chr1	12635101	C-T	HET
SBS	Chr1	29130821	T-A	HET
SBS	Chr1	39314801	G-C	HOMO
SBS	Chr2	18055087	A-C	HET
SBS	Chr2	19983093	C-T	HET
SBS	Chr2	23133073	T-A	HET
SBS	Chr2	23528764	G-A	HET
SBS	Chr2	28974686	G-T	HET
SBS	Chr3	8935830	G-A	HET
SBS	Chr3	18516677	G-T	HET
SBS	Chr3	19220175	G-C	HET
SBS	Chr3	22618228	T-C	HET
SBS	Chr3	37159989	C-A	HOMO
SBS	Chr4	370677	G-A	HOMO		OsKitaake04g002200
SBS	Chr4	4015826	G-A	HOMO		OsKitaake04g019500
SBS	Chr4	10237104	C-T	HOMO
SBS	Chr4	24549603	G-T	HOMO
SBS	Chr5	8328210	C-T	HET
SBS	Chr5	8530434	C-T	HET
SBS	Chr6	83321	G-T	HET
SBS	Chr6	13437715	T-A	HET
SBS	Chr6	15136381	G-C	HET
SBS	Chr6	16191382	C-T	HET
SBS	Chr6	22088765	G-A	HOMO
SBS	Chr6	25319641	C-T	HET		OsKitaake06g224700
SBS	Chr7	5376781	C-T	HOMO
SBS	Chr7	11094771	T-G	HET
SBS	Chr7	11928280	C-T	HET
SBS	Chr7	12132131	T-C	HET
SBS	Chr7	18168528	A-G	HET
SBS	Chr8	2577412	C-T	HET
SBS	Chr8	5723551	C-T	HET
SBS	Chr8	10411158	T-C	HOMO
SBS	Chr8	20251029	G-A	HET
SBS	Chr9	5261589	C-T	HOMO
SBS	Chr9	7060859	T-C	HET
SBS	Chr9	21618810	G-T	HOMO
SBS	Chr10	10680196	T-C	HOMO
SBS	Chr11	10114917	T-A	HOMO
SBS	Chr11	24383939	T-G	HOMO
SBS	Chr12	17529662	C-T	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	135706	135707	2
Deletion	Chr12	616409	616409	1
Deletion	Chr6	3436543	3436545	3	OsKitaake06g048200
Deletion	Chr12	4080043	4080043	1	OsKitaake12g055600
Deletion	Chr2	7467319	7467328	10
Deletion	Chr6	9759046	9759046	1
Deletion	Chr5	10630418	10630436	19
Deletion	Chr8	11431001	11475000	44000	2
Deletion	Chr9	12584210	12584213	4
Deletion	Chr4	13262243	13262252	10
Deletion	Chr10	15671138	15671140	3
Deletion	Chr9	16065339	16065340	2
Deletion	Chr1	16076781	16076782	2
Deletion	Chr4	16232079	16232079	1
Deletion	Chr2	18504245	18504250	6
Deletion	Chr5	19530276	19530287	12
Deletion	Chr9	19845678	19845681	4
Deletion	Chr6	21196861	21196867	7
Deletion	Chr4	24598416	24598416	1
Deletion	Chr11	25024533	25024533	1
Deletion	Chr5	25193660	25193670	11	OsKitaake05g219600
Deletion	Chr2	28871001	28906000	35000	3
Deletion	Chr7	29356254	29356261	8
Deletion	Chr1	32911649	32911658	10
Deletion	Chr1	34352655	34352655	1
Deletion	Chr3	34977964	34977966	3
Deletion	Chr4	35319807	35319813	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3995145	3995268
Inversion	Chr5	14186463	14186595
Inversion	Chr6	19218130	19218473
Inversion	Chr4	26791262	26791647	OsKitaake04g193500
Inversion	Chr3	32713315	32713664

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes