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| Mutant Information |
|---|
| Mutant Name | FN4482-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4482-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12571271 | C-A | HET | ||
| SBS | Chr1 | 25668410 | G-A | HET | ||
| SBS | Chr1 | 31761091 | C-T | HET | ||
| SBS | Chr1 | 32423484 | C-G | HET | ||
| SBS | Chr2 | 4263516 | A-T | HOMO | ||
| SBS | Chr2 | 12753121 | C-T | HOMO | OsKitaake02g142500 | |
| SBS | Chr3 | 3183877 | T-A | HOMO | ||
| SBS | Chr3 | 10345940 | C-A | HET | OsKitaake03g141300 | |
| SBS | Chr3 | 15263120 | C-G | HET | OsKitaake03g198000 | |
| SBS | Chr4 | 1466144 | C-T | HET | ||
| SBS | Chr4 | 7056641 | C-T | HET | ||
| SBS | Chr4 | 30984007 | A-C | HET | ||
| SBS | Chr4 | 34139259 | G-A | HET | ||
| SBS | Chr6 | 2663243 | C-T | HOMO | ||
| SBS | Chr6 | 18220067 | A-T | HET | ||
| SBS | Chr6 | 28730799 | G-A | HET | ||
| SBS | Chr7 | 3461750 | C-T | HOMO | ||
| SBS | Chr7 | 25196088 | T-A | HOMO | ||
| SBS | Chr8 | 1456883 | C-A | HET | OsKitaake08g018000 | |
| SBS | Chr8 | 4689298 | A-T | HET | ||
| SBS | Chr8 | 27157189 | G-A | HOMO | OsKitaake08g222200 | |
| SBS | Chr9 | 2120482 | G-T | HET | ||
| SBS | Chr9 | 10101174 | A-G | HET | ||
| SBS | Chr10 | 23644629 | C-T | HET | ||
| SBS | Chr11 | 6582167 | G-C | HOMO | ||
| SBS | Chr11 | 16888512 | A-C | HOMO | ||
| SBS | Chr11 | 24581670 | G-A | HET | ||
| SBS | Chr12 | 7850913 | C-A | HOMO |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 413473 | 413474 | 2 | |
| Deletion | Chr4 | 1307989 | 1308030 | 42 | |
| Deletion | Chr5 | 2658836 | 2658836 | 1 | |
| Deletion | Chr11 | 2980150 | 2980167 | 18 | |
| Deletion | Chr2 | 6204788 | 6204788 | 1 | |
| Deletion | Chr4 | 8292295 | 8292300 | 6 | |
| Deletion | Chr3 | 8327285 | 8327285 | 1 | |
| Deletion | Chr9 | 11515257 | 11515257 | 1 | |
| Deletion | Chr5 | 11796549 | 11796556 | 8 | |
| Deletion | Chr10 | 12407430 | 12407431 | 2 | |
| Deletion | Chr2 | 13398818 | 13398820 | 3 | |
| Deletion | Chr8 | 17094001 | 17167000 | 73000 | 4 |
| Deletion | Chr7 | 17270838 | 17270929 | 92 | |
| Deletion | Chr12 | 19064399 | 19064399 | 1 | |
| Deletion | Chr10 | 19374001 | 19387000 | 13000 | OsKitaake10g141100 |
| Deletion | Chr4 | 20468001 | 20485000 | 17000 | 2 |
| Deletion | Chr6 | 20864776 | 20864798 | 23 |
Insertions: 6
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 2401229 | 2541430 | |
| Inversion | Chr6 | 2401242 | 2541430 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 29488094 | Chr5 | 16340990 | OsKitaake05g125200 |