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Mutant Information

Mutant Name	FN4483-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4483-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1281035 G-T HET
SBS Chr1 26680179 C-T HET
SBS Chr1 41153666 G-A HET
SBS Chr2 18626508 G-A HET
SBS Chr2 30487008 C-A HOMO
SBS Chr3 4093069 T-G HOMO
SBS Chr3 5100268 G-A HOMO
SBS Chr3 14510402 A-T HET
SBS Chr3 19238281 C-A HET
SBS Chr3 20332440 C-T HET
SBS Chr4 7099858 C-T HOMO
SBS Chr4 11486493 G-A HOMO
SBS Chr4 17526705 T-A HOMO
SBS Chr4 22073317 A-G HET
SBS Chr4 22749136 A-C HOMO
SBS Chr4 28931067 A-G HET
SBS Chr4 29642248 C-T HET
SBS Chr5 1649073 T-C HET
SBS Chr5 6091804 C-G HET
SBS Chr5 22920838 T-C HET
SBS Chr6 27272336 C-T HET
SBS Chr7 19310309 A-T HOMO
SBS Chr8 25122560 G-A HOMO
SBS Chr8 26936160 G-A HET
SBS Chr9 10392385 G-T HET
SBS Chr9 13182075 G-A HET
SBS Chr10 4940107 T-C HET
SBS Chr10 5617453 C-T HOMO
SBS Chr10 6174811 G-A HOMO
SBS Chr10 11846851 T-C HOMO
SBS Chr11 1427224 G-T HET
SBS Chr11 6963768 G-A HET
SBS Chr11 12000662 C-G HET
SBS Chr11 12000663 G-T HET
SBS Chr11 12606138 G-T HET
SBS Chr11 23647255 A-C HET
SBS Chr11 29428047 G-A HET
SBS Chr12 20716149 A-T HOMO OsKitaake12g161600
SBS Chr12 20807906 T-A HET

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4211978 4211978 1
Deletion Chr5 4750001 4812000 62000 OsKitaake05g053750
Deletion Chr4 5910592 5910593 2
Deletion Chr12 6313766 6313766 1
Deletion Chr7 7343001 7541000 198000 13
Deletion Chr2 7586554 7586559 6
Deletion Chr2 11403491 11403491 1
Deletion Chr3 12403861 12403869 9
Deletion Chr12 13316522 13316522 1
Deletion Chr12 13540001 13644000 104000 5
Deletion Chr12 14356030 14356030 1
Deletion Chr12 14583848 14583848 1
Deletion Chr5 16964225 16964225 1 OsKitaake05g130100
Deletion Chr3 18505668 18505668 1
Deletion Chr7 20462124 20462137 14
Deletion Chr7 22074565 22074584 20
Deletion Chr2 23342858 23342859 2
Deletion Chr4 26258174 26258174 1 OsKitaake04g186900
Deletion Chr11 27898221 27898226 6
Deletion Chr1 31467970 31467970 1
Deletion Chr2 31616395 31616395 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33925215 33925217 1
Insertion Chr2 8114483 8114485 1
Insertion Chr2 26042132 26042135 2
Insertion Chr6 12951370 12951372 1
Insertion Chr8 9052760 9052763 2
Insertion Chr12 20478460 20478462 1
Insertion Chr1 12255086 12255088 1
Insertion Chr1 25451472 25451474 1
Insertion Chr3 4297493 4297495 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2440053 2440282
Inversion Chr8 4017384 4017646 OsKitaake08g046200
Inversion Chr9 16375575 16375791
Inversion Chr11 17267508 17794367
Inversion Chr11 17267522 17794417
Inversion Chr11 22578439 22578650

Translocations: 11

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5250934 Chr2 32684301 OsKitaake02g334900
Translocation Chr6 5250943 Chr2 32760118
Translocation Chr8 14403048 Chr2 32760123 OsKitaake08g113000
Translocation Chr8 14403049 Chr2 32760577 OsKitaake08g113000
Translocation Chr9 16088946 Chr6 1640775
Translocation Chr10 19710779 Chr8 14113829
Translocation Chr10 19711684 Chr8 14113809 OsKitaake10g146000
Translocation Chr10 20561623 Chr5 29855807 OsKitaake05g285800
Translocation Chr10 20577648 Chr5 29856008 2
Translocation Chr4 23639051 Chr2 32665066 OsKitaake02g334500
Translocation Chr4 23639171 Chr2 32684299 OsKitaake02g334900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1281035	G-T	HET
SBS	Chr1	26680179	C-T	HET
SBS	Chr1	41153666	G-A	HET
SBS	Chr2	18626508	G-A	HET
SBS	Chr2	30487008	C-A	HOMO
SBS	Chr3	4093069	T-G	HOMO
SBS	Chr3	5100268	G-A	HOMO
SBS	Chr3	14510402	A-T	HET
SBS	Chr3	19238281	C-A	HET
SBS	Chr3	20332440	C-T	HET
SBS	Chr4	7099858	C-T	HOMO
SBS	Chr4	11486493	G-A	HOMO
SBS	Chr4	17526705	T-A	HOMO
SBS	Chr4	22073317	A-G	HET
SBS	Chr4	22749136	A-C	HOMO
SBS	Chr4	28931067	A-G	HET
SBS	Chr4	29642248	C-T	HET
SBS	Chr5	1649073	T-C	HET
SBS	Chr5	6091804	C-G	HET
SBS	Chr5	22920838	T-C	HET
SBS	Chr6	27272336	C-T	HET
SBS	Chr7	19310309	A-T	HOMO
SBS	Chr8	25122560	G-A	HOMO
SBS	Chr8	26936160	G-A	HET
SBS	Chr9	10392385	G-T	HET
SBS	Chr9	13182075	G-A	HET
SBS	Chr10	4940107	T-C	HET
SBS	Chr10	5617453	C-T	HOMO
SBS	Chr10	6174811	G-A	HOMO
SBS	Chr10	11846851	T-C	HOMO
SBS	Chr11	1427224	G-T	HET
SBS	Chr11	6963768	G-A	HET
SBS	Chr11	12000662	C-G	HET
SBS	Chr11	12000663	G-T	HET
SBS	Chr11	12606138	G-T	HET
SBS	Chr11	23647255	A-C	HET
SBS	Chr11	29428047	G-A	HET
SBS	Chr12	20716149	A-T	HOMO		OsKitaake12g161600
SBS	Chr12	20807906	T-A	HET

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4211978	4211978	1
Deletion	Chr5	4750001	4812000	62000	OsKitaake05g053750
Deletion	Chr4	5910592	5910593	2
Deletion	Chr12	6313766	6313766	1
Deletion	Chr7	7343001	7541000	198000	13
Deletion	Chr2	7586554	7586559	6
Deletion	Chr2	11403491	11403491	1
Deletion	Chr3	12403861	12403869	9
Deletion	Chr12	13316522	13316522	1
Deletion	Chr12	13540001	13644000	104000	5
Deletion	Chr12	14356030	14356030	1
Deletion	Chr12	14583848	14583848	1
Deletion	Chr5	16964225	16964225	1	OsKitaake05g130100
Deletion	Chr3	18505668	18505668	1
Deletion	Chr7	20462124	20462137	14
Deletion	Chr7	22074565	22074584	20
Deletion	Chr2	23342858	23342859	2
Deletion	Chr4	26258174	26258174	1	OsKitaake04g186900
Deletion	Chr11	27898221	27898226	6
Deletion	Chr1	31467970	31467970	1
Deletion	Chr2	31616395	31616395	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2440053	2440282
Inversion	Chr8	4017384	4017646	OsKitaake08g046200
Inversion	Chr9	16375575	16375791
Inversion	Chr11	17267508	17794367
Inversion	Chr11	17267522	17794417
Inversion	Chr11	22578439	22578650

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes