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Mutant Information

Mutant Name	FN4488-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4488-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4911534 A-G HET
SBS Chr1 11505706 G-A HET
SBS Chr1 15221388 G-A HET
SBS Chr1 20633480 G-A HET
SBS Chr1 38810357 T-C HET
SBS Chr2 14500151 G-T HOMO
SBS Chr2 19778707 C-A HET
SBS Chr2 28793968 T-G HOMO
SBS Chr2 28793973 A-T HOMO
SBS Chr3 13353894 T-C HET
SBS Chr3 18428594 A-T HET
SBS Chr3 28091834 G-C HOMO
SBS Chr3 32825647 A-T HET
SBS Chr4 21964727 C-T HET
SBS Chr4 29756089 G-A HET
SBS Chr5 779670 A-G HET
SBS Chr5 3317429 A-C HET
SBS Chr5 3694650 G-A HET
SBS Chr5 4985533 C-T HET
SBS Chr5 24509740 G-T HOMO
SBS Chr5 28754710 A-G HOMO
SBS Chr6 2225926 A-G HET
SBS Chr6 24169784 G-A HET
SBS Chr7 1105441 T-C HOMO
SBS Chr7 6401684 G-A HOMO
SBS Chr7 13297962 C-T HET
SBS Chr7 17631735 G-T HOMO
SBS Chr7 20586791 C-T HET
SBS Chr7 24701584 A-T HOMO
SBS Chr8 19404422 C-T HOMO
SBS Chr9 4679141 T-C HOMO
SBS Chr9 15031605 C-T HET
SBS Chr10 1395079 T-C HET
SBS Chr10 7464712 G-A HET
SBS Chr10 12692713 G-C HET OsKitaake10g077200
SBS Chr10 23683386 T-C HOMO

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1651718 1651731 14
Deletion Chr12 1933048 1933054 7
Deletion Chr12 2283151 2283152 2
Deletion Chr9 2377504 2377504 1
Deletion Chr4 3863027 3863027 1
Deletion Chr12 7430033 7430113 81
Deletion Chr7 10530116 10530117 2
Deletion Chr2 13293550 13293565 16
Deletion Chr9 14166370 14166371 2
Deletion Chr4 15586113 15586113 1
Deletion Chr6 20813587 20813587 1
Deletion Chr3 20896971 20896981 11
Deletion Chr3 21219196 21219199 4
Deletion Chr5 21424867 21424868 2
Deletion Chr11 23149357 23149370 14
Deletion Chr11 24342192 24342229 38
Deletion Chr7 27487304 27487306 3
Deletion Chr5 27960401 27960411 11 OsKitaake05g257500
Deletion Chr6 28946084 28946090 7
Deletion Chr4 30085810 30085810 1
Deletion Chr3 31838947 31838955 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41439318 41439321 2
Insertion Chr3 9287649 9287652 2
Insertion Chr5 26862713 26862715 1
Insertion Chr6 201133 201135 1 OsKitaake06g000901
Insertion Chr8 9225393 9225395 1
Insertion Chr10 16364208 16364210 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 9377434 9377557
Inversion Chr3 27081599 27081936

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 5580352 Chr2 4636262 OsKitaake03g079400
Translocation Chr3 5606798 Chr2 4636260 OsKitaake03g079600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4911534	A-G	HET
SBS	Chr1	11505706	G-A	HET
SBS	Chr1	15221388	G-A	HET
SBS	Chr1	20633480	G-A	HET
SBS	Chr1	38810357	T-C	HET
SBS	Chr2	14500151	G-T	HOMO
SBS	Chr2	19778707	C-A	HET
SBS	Chr2	28793968	T-G	HOMO
SBS	Chr2	28793973	A-T	HOMO
SBS	Chr3	13353894	T-C	HET
SBS	Chr3	18428594	A-T	HET
SBS	Chr3	28091834	G-C	HOMO
SBS	Chr3	32825647	A-T	HET
SBS	Chr4	21964727	C-T	HET
SBS	Chr4	29756089	G-A	HET
SBS	Chr5	779670	A-G	HET
SBS	Chr5	3317429	A-C	HET
SBS	Chr5	3694650	G-A	HET
SBS	Chr5	4985533	C-T	HET
SBS	Chr5	24509740	G-T	HOMO
SBS	Chr5	28754710	A-G	HOMO
SBS	Chr6	2225926	A-G	HET
SBS	Chr6	24169784	G-A	HET
SBS	Chr7	1105441	T-C	HOMO
SBS	Chr7	6401684	G-A	HOMO
SBS	Chr7	13297962	C-T	HET
SBS	Chr7	17631735	G-T	HOMO
SBS	Chr7	20586791	C-T	HET
SBS	Chr7	24701584	A-T	HOMO
SBS	Chr8	19404422	C-T	HOMO
SBS	Chr9	4679141	T-C	HOMO
SBS	Chr9	15031605	C-T	HET
SBS	Chr10	1395079	T-C	HET
SBS	Chr10	7464712	G-A	HET
SBS	Chr10	12692713	G-C	HET		OsKitaake10g077200
SBS	Chr10	23683386	T-C	HOMO

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1651718	1651731	14
Deletion	Chr12	1933048	1933054	7
Deletion	Chr12	2283151	2283152	2
Deletion	Chr9	2377504	2377504	1
Deletion	Chr4	3863027	3863027	1
Deletion	Chr12	7430033	7430113	81
Deletion	Chr7	10530116	10530117	2
Deletion	Chr2	13293550	13293565	16
Deletion	Chr9	14166370	14166371	2
Deletion	Chr4	15586113	15586113	1
Deletion	Chr6	20813587	20813587	1
Deletion	Chr3	20896971	20896981	11
Deletion	Chr3	21219196	21219199	4
Deletion	Chr5	21424867	21424868	2
Deletion	Chr11	23149357	23149370	14
Deletion	Chr11	24342192	24342229	38
Deletion	Chr7	27487304	27487306	3
Deletion	Chr5	27960401	27960411	11	OsKitaake05g257500
Deletion	Chr6	28946084	28946090	7
Deletion	Chr4	30085810	30085810	1
Deletion	Chr3	31838947	31838955	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9377434	9377557
Inversion	Chr3	27081599	27081936

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes