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| Mutant Information |
|---|
| Mutant Name | FN4489-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4489-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18627557 | T-C | HET | ||
| SBS | Chr2 | 15800928 | T-C | HOMO | ||
| SBS | Chr3 | 5995152 | G-T | HET | ||
| SBS | Chr4 | 2493032 | G-A | HOMO | ||
| SBS | Chr4 | 25343975 | C-T | HET | OsKitaake04g172800 | |
| SBS | Chr5 | 5384239 | C-T | HET | ||
| SBS | Chr5 | 5706172 | C-T | HET | ||
| SBS | Chr5 | 5706175 | C-A | HET | ||
| SBS | Chr6 | 22148964 | G-A | HET | ||
| SBS | Chr6 | 30074280 | T-G | HET | ||
| SBS | Chr7 | 4732175 | T-A | HOMO | ||
| SBS | Chr8 | 834285 | G-A | HET | ||
| SBS | Chr8 | 7740857 | C-T | HET | ||
| SBS | Chr8 | 23037807 | T-A | HET | ||
| SBS | Chr8 | 23184119 | T-A | HET | ||
| SBS | Chr10 | 833996 | A-C | HET | ||
| SBS | Chr10 | 22426249 | A-G | HOMO | ||
| SBS | Chr11 | 17064300 | T-C | HOMO | ||
| SBS | Chr12 | 3269049 | A-G | HOMO | ||
| SBS | Chr12 | 11377689 | C-A | HET |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2530001 | 2582000 | 52000 | 3 |
| Deletion | Chr6 | 3226336 | 3226341 | 6 | |
| Deletion | Chr4 | 3413449 | 3413449 | 1 | |
| Deletion | Chr6 | 5600077 | 5600077 | 1 | |
| Deletion | Chr8 | 6347992 | 6347996 | 5 | OsKitaake08g068300 |
| Deletion | Chr9 | 9441307 | 9441307 | 1 | |
| Deletion | Chr10 | 9972478 | 9972485 | 8 | |
| Deletion | Chr12 | 10660649 | 10660653 | 5 | |
| Deletion | Chr11 | 12199688 | 12199692 | 5 | |
| Deletion | Chr3 | 12216822 | 12216822 | 1 | |
| Deletion | Chr6 | 12895255 | 12895255 | 1 | |
| Deletion | Chr5 | 14215640 | 14215653 | 14 | |
| Deletion | Chr7 | 23599178 | 23599182 | 5 | |
| Deletion | Chr1 | 23790419 | 23790419 | 1 | OsKitaake01g228300 |
| Deletion | Chr3 | 24757220 | 24757313 | 94 | |
| Deletion | Chr1 | 30530629 | 30530629 | 1 | |
| Deletion | Chr1 | 35537602 | 35537602 | 1 | |
| Deletion | Chr1 | 38738346 | 38738395 | 50 |
Insertions: 5
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 12075384 | 12075564 | OsKitaake04g058400 |