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Mutant Information

Mutant Name	FN449-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN449-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30753399 A-G Hetero INTRON
SBS Chr2 1035264 C-A Hetero UTR_5_PRIME
SBS Chr2 4936509 T-C Hetero INTRON
SBS Chr2 6301766 G-A Hetero UTR_3_PRIME
SBS Chr2 31134846 G-A Hetero INTERGENIC
SBS Chr2 36271041 C-T Hetero INTERGENIC
SBS Chr3 20146544 C-G Hetero INTERGENIC
SBS Chr3 37747191 C-A Hetero INTERGENIC
SBS Chr4 7920077 C-G Hetero INTERGENIC
SBS Chr4 13406507 A-T Hetero INTERGENIC
SBS Chr4 30585331 A-T Homo INTERGENIC
SBS Chr4 36279841 G-A Homo INTERGENIC
SBS Chr5 739803 C-A Hetero INTERGENIC
SBS Chr5 739814 T-G Hetero INTERGENIC
SBS Chr5 22335734 G-T Hetero UTR_3_PRIME
SBS Chr5 28322147 G-T Hetero SPLICE_SITE_DONOR OsKitaake05g263100
SBS Chr6 15853344 C-T Hetero INTERGENIC
SBS Chr6 17033846 C-T Hetero INTERGENIC
SBS Chr7 6533843 T-G Homo INTERGENIC
SBS Chr7 7057969 T-A Hetero INTERGENIC
SBS Chr7 7383046 G-A Hetero INTERGENIC
SBS Chr7 15295570 T-C Hetero INTERGENIC
SBS Chr8 2503983 C-T Hetero INTERGENIC
SBS Chr8 29221125 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g254500
SBS Chr9 18211695 G-A Hetero INTERGENIC
SBS Chr10 4183696 A-T Hetero INTERGENIC
SBS Chr10 8803940 T-A Hetero INTERGENIC
SBS Chr10 8923418 A-G Hetero INTERGENIC
SBS Chr10 21910893 A-G Homo INTRON
SBS Chr10 23582864 G-T Homo INTRON
SBS Chr11 14994038 G-A Homo INTERGENIC
SBS Chr11 25342425 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g203500
SBS Chr12 2970557 A-T Hetero INTERGENIC
SBS Chr12 11838083 G-T Hetero INTERGENIC
SBS Chr12 11838084 C-T Hetero INTERGENIC
SBS Chr12 19284165 G-A Homo INTERGENIC
SBS Chr12 22612819 T-C Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1920431 1920432 1
Deletion Chr1 4707843 4707845 2
Deletion Chr6 5177001 5279000 101999 21
Deletion Chr12 10326887 10326888 1
Deletion Chr5 10347224 10347225 1
Deletion Chr2 12356958 12356960 2
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr11 17539687 17539691 4
Deletion Chr12 23851731 23851733 2
Deletion Chr6 25223456 25223458 2
Deletion Chr8 26115165 26115167 2
Deletion Chr6 27836531 27836533 2
Deletion Chr8 28857351 28857353 2
Deletion Chr6 29136797 29136799 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35911726 35911730 3
Insertion Chr2 13778278 13778280 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30753399	A-G	Hetero	INTRON
SBS	Chr2	1035264	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	4936509	T-C	Hetero	INTRON
SBS	Chr2	6301766	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	31134846	G-A	Hetero	INTERGENIC
SBS	Chr2	36271041	C-T	Hetero	INTERGENIC
SBS	Chr3	20146544	C-G	Hetero	INTERGENIC
SBS	Chr3	37747191	C-A	Hetero	INTERGENIC
SBS	Chr4	7920077	C-G	Hetero	INTERGENIC
SBS	Chr4	13406507	A-T	Hetero	INTERGENIC
SBS	Chr4	30585331	A-T	Homo	INTERGENIC
SBS	Chr4	36279841	G-A	Homo	INTERGENIC
SBS	Chr5	739803	C-A	Hetero	INTERGENIC
SBS	Chr5	739814	T-G	Hetero	INTERGENIC
SBS	Chr5	22335734	G-T	Hetero	UTR_3_PRIME
SBS	Chr5	28322147	G-T	Hetero	SPLICE_SITE_DONOR	OsKitaake05g263100
SBS	Chr6	15853344	C-T	Hetero	INTERGENIC
SBS	Chr6	17033846	C-T	Hetero	INTERGENIC
SBS	Chr7	6533843	T-G	Homo	INTERGENIC
SBS	Chr7	7057969	T-A	Hetero	INTERGENIC
SBS	Chr7	7383046	G-A	Hetero	INTERGENIC
SBS	Chr7	15295570	T-C	Hetero	INTERGENIC
SBS	Chr8	2503983	C-T	Hetero	INTERGENIC
SBS	Chr8	29221125	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g254500
SBS	Chr9	18211695	G-A	Hetero	INTERGENIC
SBS	Chr10	4183696	A-T	Hetero	INTERGENIC
SBS	Chr10	8803940	T-A	Hetero	INTERGENIC
SBS	Chr10	8923418	A-G	Hetero	INTERGENIC
SBS	Chr10	21910893	A-G	Homo	INTRON
SBS	Chr10	23582864	G-T	Homo	INTRON
SBS	Chr11	14994038	G-A	Homo	INTERGENIC
SBS	Chr11	25342425	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g203500
SBS	Chr12	2970557	A-T	Hetero	INTERGENIC
SBS	Chr12	11838083	G-T	Hetero	INTERGENIC
SBS	Chr12	11838084	C-T	Hetero	INTERGENIC
SBS	Chr12	19284165	G-A	Homo	INTERGENIC
SBS	Chr12	22612819	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1920431	1920432	1
Deletion	Chr1	4707843	4707845	2
Deletion	Chr6	5177001	5279000	101999	21
Deletion	Chr12	10326887	10326888	1
Deletion	Chr5	10347224	10347225	1
Deletion	Chr2	12356958	12356960	2
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr11	17539687	17539691	4
Deletion	Chr12	23851731	23851733	2
Deletion	Chr6	25223456	25223458	2
Deletion	Chr8	26115165	26115167	2
Deletion	Chr6	27836531	27836533	2
Deletion	Chr8	28857351	28857353	2
Deletion	Chr6	29136797	29136799	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes