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Mutant Information |
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Mutant Name | FN4490-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4490-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 6480463 | T-G | HET | OsKitaake01g081900 | |
SBS | Chr1 | 11523815 | G-A | HOMO | ||
SBS | Chr2 | 2492229 | G-A | HOMO | ||
SBS | Chr2 | 19326091 | G-A | HOMO | ||
SBS | Chr2 | 30106454 | G-C | HOMO | OsKitaake02g305700 | |
SBS | Chr3 | 1273273 | T-A | HET | ||
SBS | Chr3 | 6715992 | T-A | HOMO | ||
SBS | Chr4 | 6120068 | G-A | HET | ||
SBS | Chr4 | 16684989 | C-A | HOMO | ||
SBS | Chr4 | 27459938 | T-A | HET | ||
SBS | Chr4 | 30915917 | T-A | HOMO | ||
SBS | Chr4 | 30915918 | A-T | HOMO | ||
SBS | Chr4 | 31090689 | C-T | HOMO | OsKitaake04g242000 | |
SBS | Chr6 | 26645631 | C-T | HET | ||
SBS | Chr7 | 19453303 | A-C | HET | ||
SBS | Chr8 | 5881174 | T-A | HET | ||
SBS | Chr8 | 5912595 | T-A | HET | ||
SBS | Chr8 | 12876056 | G-T | HET | ||
SBS | Chr8 | 15501166 | T-C | HET | ||
SBS | Chr8 | 19111816 | C-T | HET | ||
SBS | Chr8 | 19902098 | T-A | HET | ||
SBS | Chr8 | 27524576 | C-A | HET | ||
SBS | Chr9 | 16159772 | T-A | HET | ||
SBS | Chr10 | 4732931 | C-T | HET | ||
SBS | Chr10 | 8964817 | A-G | HOMO | ||
SBS | Chr10 | 22558859 | C-T | HET | ||
SBS | Chr11 | 10877428 | G-T | HET | ||
SBS | Chr12 | 15073494 | C-A | HOMO | ||
SBS | Chr12 | 19784997 | C-T | HET | ||
SBS | Chr12 | 19784998 | C-T | HET | ||
SBS | Chr12 | 19848541 | G-A | HET | OsKitaake12g148200 | |
SBS | Chr12 | 24512163 | C-T | HET | ||
SBS | Chr12 | 25999766 | C-T | HET |
Deletions: 33
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr2 | 444070 | 444087 | 18 | OsKitaake02g006300 |
Deletion | Chr12 | 1158899 | 1158909 | 11 | |
Deletion | Chr8 | 2519809 | 2519812 | 4 | |
Deletion | Chr12 | 3080950 | 3080951 | 2 | OsKitaake12g044900 |
Deletion | Chr3 | 3731098 | 3731098 | 1 | |
Deletion | Chr4 | 3941387 | 3941392 | 6 | |
Deletion | Chr8 | 4347357 | 4347360 | 4 | |
Deletion | Chr9 | 5670022 | 5670022 | 1 | |
Deletion | Chr9 | 9882639 | 9882649 | 11 | |
Deletion | Chr1 | 11610791 | 11610796 | 6 | |
Deletion | Chr7 | 11961058 | 11961063 | 6 | |
Deletion | Chr5 | 12114426 | 12114432 | 7 | |
Deletion | Chr7 | 12440653 | 12440653 | 1 | |
Deletion | Chr10 | 12665088 | 12665091 | 4 | |
Deletion | Chr8 | 13950160 | 13950167 | 8 | |
Deletion | Chr10 | 17004380 | 17004382 | 3 | |
Deletion | Chr4 | 17897533 | 17897533 | 1 | |
Deletion | Chr4 | 19144645 | 19144650 | 6 | |
Deletion | Chr2 | 21390981 | 21390981 | 1 | |
Deletion | Chr6 | 21540177 | 21540177 | 1 | |
Deletion | Chr2 | 22764656 | 22764656 | 1 | |
Deletion | Chr12 | 23351331 | 23351350 | 20 | |
Deletion | Chr8 | 24091902 | 24091902 | 1 | |
Deletion | Chr12 | 24500014 | 24500014 | 1 | |
Deletion | Chr12 | 25165013 | 25165014 | 2 | OsKitaake12g204200 |
Deletion | Chr6 | 27174498 | 27174498 | 1 | |
Deletion | Chr5 | 27332455 | 27332457 | 3 | |
Deletion | Chr1 | 31941033 | 31941060 | 28 | |
Deletion | Chr1 | 32328604 | 32328604 | 1 | |
Deletion | Chr2 | 33610386 | 33610386 | 1 | |
Deletion | Chr1 | 34453286 | 34453293 | 8 | |
Deletion | Chr2 | 35803661 | 35803661 | 1 | |
Deletion | Chr1 | 39074801 | 39074818 | 18 |
Insertions: 6
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr12 | 5735876 | 5736014 | |
Inversion | Chr11 | 13701235 | 13701438 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr9 | 3383027 | Chr8 | 24891980 | |
Translocation | Chr9 | 3389615 | Chr4 | 11843242 | |
Translocation | Chr9 | 3389618 | Chr8 | 24891975 | |
Translocation | Chr3 | 36036857 | Chr2 | 35188291 | OsKitaake02g368400 |
Translocation | Chr3 | 36037072 | Chr2 | 35188284 | OsKitaake02g368400 |