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Mutant Information 

Mutant NameFN4490-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4490-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr16480463T-GHETOsKitaake01g081900
SBS  Chr111523815G-AHOMO
SBS  Chr22492229G-AHOMO
SBS  Chr219326091G-AHOMO
SBS  Chr230106454G-CHOMOOsKitaake02g305700
SBS  Chr31273273T-AHET
SBS  Chr36715992T-AHOMO
SBS  Chr46120068G-AHET
SBS  Chr416684989C-AHOMO
SBS  Chr427459938T-AHET
SBS  Chr430915917T-AHOMO
SBS  Chr430915918A-THOMO
SBS  Chr431090689C-THOMOOsKitaake04g242000
SBS  Chr626645631C-THET
SBS  Chr719453303A-CHET
SBS  Chr85881174T-AHET
SBS  Chr85912595T-AHET
SBS  Chr812876056G-THET
SBS  Chr815501166T-CHET
SBS  Chr819111816C-THET
SBS  Chr819902098T-AHET
SBS  Chr827524576C-AHET
SBS  Chr916159772T-AHET
SBS  Chr104732931C-THET
SBS  Chr108964817A-GHOMO
SBS  Chr1022558859C-THET
SBS  Chr1110877428G-THET
SBS  Chr1215073494C-AHOMO
SBS  Chr1219784997C-THET
SBS  Chr1219784998C-THET
SBS  Chr1219848541G-AHETOsKitaake12g148200
SBS  Chr1224512163C-THET
SBS  Chr1225999766C-THET

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr244407044408718OsKitaake02g006300
Deletion  Chr121158899115890911
Deletion  Chr8251980925198124
Deletion  Chr12308095030809512OsKitaake12g044900
Deletion  Chr3373109837310981
Deletion  Chr4394138739413926
Deletion  Chr8434735743473604
Deletion  Chr9567002256700221
Deletion  Chr99882639988264911
Deletion  Chr111610791116107966
Deletion  Chr711961058119610636
Deletion  Chr512114426121144327
Deletion  Chr712440653124406531
Deletion  Chr1012665088126650914
Deletion  Chr813950160139501678
Deletion  Chr1017004380170043823
Deletion  Chr417897533178975331
Deletion  Chr419144645191446506
Deletion  Chr221390981213909811
Deletion  Chr621540177215401771
Deletion  Chr222764656227646561
Deletion  Chr12233513312335135020
Deletion  Chr824091902240919021
Deletion  Chr1224500014245000141
Deletion  Chr1225165013251650142OsKitaake12g204200
Deletion  Chr627174498271744981
Deletion  Chr527332455273324573
Deletion  Chr1319410333194106028
Deletion  Chr132328604323286041
Deletion  Chr233610386336103861
Deletion  Chr134453286344532938
Deletion  Chr235803661358036611
Deletion  Chr1390748013907481818

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion  Chr436959568369595701
Insertion  Chr710458449104584522
Insertion  Chr321540310215403121
Insertion  Chr528072043280720451
Insertion  Chr621896557218965591
Insertion  Chr626744194267441972

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion  Chr1257358765736014
Inversion  Chr111370123513701438

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr93383027Chr824891980
Translocation  Chr93389615Chr411843242
Translocation  Chr93389618Chr824891975
Translocation  Chr336036857Chr235188291OsKitaake02g368400
Translocation  Chr336037072Chr235188284OsKitaake02g368400