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| Mutant Information |
|---|
| Mutant Name | FN4491-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4491-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17899129 | C-T | HOMO | ||
| SBS | Chr1 | 23052954 | G-A | HET | ||
| SBS | Chr1 | 24788383 | A-G | HET | ||
| SBS | Chr1 | 32133889 | A-T | HET | OsKitaake01g324100 | |
| SBS | Chr1 | 34811257 | C-G | HET | ||
| SBS | Chr1 | 43182312 | C-T | HET | ||
| SBS | Chr2 | 9632070 | C-A | HET | OsKitaake02g117400 | |
| SBS | Chr2 | 10720295 | C-A | HOMO | ||
| SBS | Chr2 | 16635010 | C-T | HOMO | ||
| SBS | Chr2 | 31332013 | C-T | HET | ||
| SBS | Chr2 | 31973821 | A-T | HET | ||
| SBS | Chr2 | 33831363 | A-T | HET | ||
| SBS | Chr3 | 988340 | C-T | HET | ||
| SBS | Chr3 | 1724509 | T-C | HOMO | ||
| SBS | Chr3 | 1743625 | C-G | HOMO | OsKitaake03g025000 | |
| SBS | Chr3 | 9582115 | C-G | HOMO | ||
| SBS | Chr3 | 16349692 | C-T | HOMO | ||
| SBS | Chr3 | 20296821 | A-G | HET | ||
| SBS | Chr3 | 20413628 | C-A | HET | ||
| SBS | Chr3 | 36633071 | C-T | HET | ||
| SBS | Chr5 | 514060 | G-A | HOMO | ||
| SBS | Chr5 | 3306046 | T-C | HET | ||
| SBS | Chr5 | 4087609 | T-A | HET | ||
| SBS | Chr5 | 11463474 | C-T | HET | ||
| SBS | Chr5 | 16115319 | G-A | HOMO | ||
| SBS | Chr5 | 25231253 | G-T | HOMO | ||
| SBS | Chr6 | 1073122 | T-A | HET | ||
| SBS | Chr6 | 11079350 | C-T | HET | ||
| SBS | Chr6 | 12722172 | C-T | HET | ||
| SBS | Chr6 | 16405858 | G-A | HET | ||
| SBS | Chr6 | 16700933 | G-A | HET | ||
| SBS | Chr7 | 10888882 | G-A | HOMO | ||
| SBS | Chr7 | 21015162 | C-T | HOMO | ||
| SBS | Chr8 | 9511115 | G-A | HET | ||
| SBS | Chr8 | 16903365 | T-C | HET | ||
| SBS | Chr9 | 10948971 | C-T | HET | ||
| SBS | Chr10 | 16260610 | C-T | HET | ||
| SBS | Chr11 | 6886025 | A-T | HOMO | ||
| SBS | Chr11 | 22260121 | T-C | HET | ||
| SBS | Chr12 | 12735373 | G-A | HET | ||
| SBS | Chr12 | 21308598 | G-C | HET | ||
| SBS | Chr12 | 25461116 | A-C | HOMO |
Deletions: 21
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 37434898 | 37434900 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 1277039 | 1324819 | |
| Inversion | Chr10 | 2340856 | 2340961 | |
| Inversion | Chr8 | 22131924 | 22132054 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 25472451 | Chr11 | 6745621 | |
| Translocation | Chr12 | 25472454 | Chr11 | 6743995 | OsKitaake12g209100 |