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| Mutant Information |
|---|
| Mutant Name | FN4492-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4492-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8350660 | T-C | HET | ||
| SBS | Chr1 | 9563089 | A-T | HET | ||
| SBS | Chr1 | 18556967 | C-A | HOMO | ||
| SBS | Chr1 | 19197478 | C-T | HOMO | ||
| SBS | Chr1 | 39897573 | G-T | HET | ||
| SBS | Chr2 | 365086 | A-G | HOMO | ||
| SBS | Chr2 | 860266 | T-A | HOMO | ||
| SBS | Chr2 | 36880420 | G-A | HET | ||
| SBS | Chr3 | 3019230 | C-T | HET | ||
| SBS | Chr3 | 22236473 | A-G | HET | ||
| SBS | Chr3 | 22497047 | C-T | HET | ||
| SBS | Chr3 | 26899438 | T-C | HET | ||
| SBS | Chr3 | 27183621 | G-A | HET | ||
| SBS | Chr3 | 30256882 | C-T | HET | ||
| SBS | Chr3 | 32851432 | G-A | HET | ||
| SBS | Chr4 | 31112518 | G-A | HET | ||
| SBS | Chr5 | 5472743 | A-T | HET | ||
| SBS | Chr5 | 15272678 | C-T | HET | ||
| SBS | Chr5 | 15272682 | G-T | HET | ||
| SBS | Chr5 | 28267089 | T-G | HET | OsKitaake05g262600 | |
| SBS | Chr5 | 30183799 | G-A | HET | ||
| SBS | Chr6 | 2427940 | G-A | HET | ||
| SBS | Chr6 | 19814087 | T-C | HET | ||
| SBS | Chr6 | 20523544 | A-G | HET | ||
| SBS | Chr6 | 22385687 | T-C | HET | ||
| SBS | Chr7 | 252636 | G-A | HET | ||
| SBS | Chr7 | 18265050 | T-C | HOMO | ||
| SBS | Chr7 | 20558356 | A-G | HET | ||
| SBS | Chr8 | 19635425 | A-T | HOMO | ||
| SBS | Chr9 | 2292361 | A-G | HOMO | ||
| SBS | Chr9 | 12052280 | T-C | HOMO | ||
| SBS | Chr10 | 263216 | C-T | HET | ||
| SBS | Chr11 | 7374947 | C-T | HET | ||
| SBS | Chr11 | 8429632 | G-A | HET | ||
| SBS | Chr11 | 12796417 | G-T | HET | ||
| SBS | Chr11 | 13199981 | T-G | HET | ||
| SBS | Chr12 | 1677366 | A-T | HET | ||
| SBS | Chr12 | 8518715 | C-T | HOMO | ||
| SBS | Chr12 | 13929244 | C-A | HOMO |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 117087 | 117087 | 1 | |
| Deletion | Chr7 | 438774 | 438783 | 10 | |
| Deletion | Chr7 | 2944643 | 2944643 | 1 | |
| Deletion | Chr2 | 7453001 | 7474000 | 21000 | OsKitaake02g099300 |
| Deletion | Chr12 | 7973522 | 7973522 | 1 | |
| Deletion | Chr11 | 8224738 | 8224744 | 7 | |
| Deletion | Chr7 | 9655876 | 9655877 | 2 | |
| Deletion | Chr4 | 10396607 | 10396607 | 1 | |
| Deletion | Chr9 | 10847830 | 10847835 | 6 | |
| Deletion | Chr8 | 11770911 | 11770911 | 1 | |
| Deletion | Chr9 | 13695231 | 13695244 | 14 | |
| Deletion | Chr12 | 22637634 | 22637653 | 20 | |
| Deletion | Chr5 | 22911931 | 22911931 | 1 | OsKitaake05g190200 |
| Deletion | Chr3 | 23207760 | 23207760 | 1 | 2 |
| Deletion | Chr7 | 23847650 | 23847656 | 7 | |
| Deletion | Chr12 | 25017951 | 25017952 | 2 | |
| Deletion | Chr11 | 27891887 | 27891887 | 1 | |
| Deletion | Chr5 | 30211877 | 30212205 | 329 | |
| Deletion | Chr1 | 31152313 | 31152313 | 1 | |
| Deletion | Chr4 | 35851002 | 35851002 | 1 |
Insertions: 6
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 8239033 | 8239247 | |
| Inversion | Chr9 | 17750430 | 17750612 | |
| Inversion | Chr3 | 28658408 | 28658520 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28616812 | Chr2 | 7473460 |